RetrogeneDB ID: retro_meug_1621

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold49131:13873..14437(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EAF2
• Ensembl ID: ENSMEUG00000005416
• Aliases: None
• Description: ELL associated factor 2 [Source:HGNC Symbol;Acc:23115]

Sequence

>retro_meug_1621
GTATCTGTTTTCAAAGACTCAAAGAAACCTTATCTAAAAGAATGTATTTTGATTATTAACTGGAGAATGTCAATAGAAAA
ACTGAGCAGCAACATCACTGTAAAGAAAACAAGAACTGAAGGAAGTAGTAAAATTGAATCTCAACTGGAAGAGCAGAAAC
AACAAATGAGAAATGCAGTTAAAACATGAAACTATGTGAAACATTCTTCACCAAAAGCAAAAGTGTCTCCAGAGTCTCCT
ATGGAAGACATTGAGAGAGAACTGAAGGCAGAAGCCAGTATAATGCACCAGATGATTAGTTCTGGTAGCTCTTCAGATTC
CCAGAGTTCTTCACCTTCAAGTAGTGAAGGGAGTTCTAGTGATTCAGAAGATGAAGGGTGCAAGCTCTCTCATTCCAGCT
CAGTAAAATGTTTATCAGGCCATCAAACCTTATCTGCTGAACCACAGCAATGGATTCTTGATACAGAGATCATGCATAAC
AGATCTCAGGATAGCAGTGGCCTTTTGATGAATACATTAAGAAACAATATGCAGCTGAGTGAATTAAGAAGTGACAGTGA
TGAG

Alignment

ORF - retro_meug_1621 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.79 %
• Parental protein coverage: 72.31 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VSVFKGSKKPYLKECILIINGECRLEKLSSNFTVKKTRAEGSSKIQSRLEQQQQQMRNAVKTSNNVKHSP
          VSVFK.SKKPYLKECILIIN.....EKLSSN.TVKKTR.EGSSKI.S.LE.Q.QQMRNAVKT.N.VKHS.
Retrocopy VSVFKDSKKPYLKECILIINWRMSIEKLSSNITVKKTRTEGSSKIESQLEEQKQQMRNAVKT*NYVKHSS

Parental  PKEKMSPESPMDDIERELKAEASIMDQMTSSDSSSESQSSSSSSSEDSSSDSEEEVCKLSHSSSVKCASG
          PK.K.SPESPM.DIERELKAEASIM.QM.SS.SSS.SQSSS.SSSE.SSSDSE.E.CKLSHSSSVKC.SG
Retrocopy PKAKVSPESPMEDIERELKAEASIMHQMISSGSSSDSQSSSPSSSEGSSSDSEDEGCKLSHSSSVKCLSG

Parental  HQTSSAESQQWIPDMETMHNRSQNGSGLLMNTLRNDLQLSESGSDSDE
          HQT.SAE.QQWI.D.E.MHNRSQ..SGLLMNTLRN..QLSE..SDSDE
Retrocopy HQTLSAEPQQWILDTEIMHNRSQDSSGLLMNTLRNNMQLSELRSDSDE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1621 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1621 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000006427	1 retrocopy	retro_cpor_235,
Felis catus	ENSFCAG00000018226	1 retrocopy	retro_fcat_1398,
Macropus eugenii	ENSMEUG00000005416	1 retrocopy	retro_meug_1621 ,
Monodelphis domestica	ENSMODG00000018271	1 retrocopy	retro_mdom_25,
Tupaia belangeri	ENSTBEG00000017542	1 retrocopy	retro_tbel_4110,