RetrogeneDB ID: | retro_cpor_86 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:2007716..2008658(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000008047 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRAGB | ||
Ensembl ID: | ENSCPOG00000011266 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 95.57 % |
Parental protein coverage: | 72.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TFDVEHSHVQFLGNLVLNLWDCGGQDSFMENYFTSQRDNIFQNVEVLIYVFDVESRELEKDMHYYQSCLE |
T.DVEHSHV.FLGNLVLNLWDCGGQD.FMENYFTSQRDNIF.NVEVLIYVFDVESRELEKDMHYYQSCLE | |
Retrocopy | TIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLE |
Parental | AILQNSPDARIFCLVHKMDLVQEDQRDLIFREREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYHLI |
AILQNSPDA.IFCLVHKMDLVQEDQRDLIF.EREEDLRRLSRPLEC.CFRTSIWDETLYKAWSSIVY.LI | |
Retrocopy | AILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLI |
Parental | PNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQS |
PNVQQLEMNLRNFA.IIEADEVLLFERATFLVISHYQCKEQRD.HRFEKISNIIKQFKLSCSKLAASFQS | |
Retrocopy | PNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLAASFQS |
Parental | MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLM |
MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPK..LLM | |
Retrocopy | MEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHSLLM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 38 .13 RPM | 7 .59 RPM |
SRP017611_kidney | 37 .48 RPM | 0 .31 RPM |
SRP017611_liver | 24 .38 RPM | 0 .30 RPM |
SRP040447_lung | 40 .38 RPM | 1 .08 RPM |
SRP040447_skeletal_muscle | 35 .40 RPM | 0 .25 RPM |