RetrogeneDB ID: | retro_cpor_893 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_32:14165083..14165599(+) | ||
Located in intron of: | ENSCPOG00000000149 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIMM17B | ||
Ensembl ID: | ENSCPOG00000008768 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.24 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MEEYAREPCPWRIVDDCGGAFTMGVIGGGVFQAIKGFRNAPVGIQHRLRGSVNAVRIRAPQIGGSFAVWG |
ME.YA.EPCPWRIV.DC...F..G.I..GVFQ.IKGF.NAPV.IQ..L..SVN..RI.APQIG.SF.V.G | |
Retrocopy | MENYAGEPCPWRIVEDCSESFMVGMISDGVFQTIKGFHNAPVRIQY*LSSSVNTARIKAPQIGDSFIVCG |
Parental | -GLFSTIDCGLVRMRGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ |
..LF.TIDC.LVRM..KE.PWNSITS.ALTG.VLAA.SGP.A.VGS.MMG.ILLA.IE...IL...YTAQ | |
Retrocopy | >SLFVTIDCALVRMQSKENPWNSITSRALTGSVLAACSGPQAIVGSVMMGVILLAIIEDISILFICYTAQ |
Parental | QFRNAPPFLEDPSQLPPKEG-TPAPGYSSYQQYH |
QF.N...FLED..QLPP..G..PAPGY.SYQ.YH | |
Retrocopy | QFHNTARFLEDAGQLPPNAG<VPAPGYPSYQRYH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .57 RPM |
SRP017611_liver | 0 .00 RPM | 18 .19 RPM |
SRP040447_lung | 0 .05 RPM | 21 .26 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 23 .04 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012474 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018496 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000008768 | 2 retrocopies |
retro_cpor_867, retro_cpor_893 ,
|
Dasypus novemcinctus | ENSDNOG00000025897 | 2 retrocopies | |
Felis catus | ENSFCAG00000002569 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011427 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004174 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005971 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000009148 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004547 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013675 | 1 retrocopy | |
Mus musculus | ENSMUSG00000031158 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007902 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027418 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000007643 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014173 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010396 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000009578 | 1 retrocopy |