RetrogeneDB ID: | retro_cpor_922 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_35:3771409..3771672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNRF2 | ||
Ensembl ID: | ENSCPOG00000027612 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FLGFKCPVCSKFVPSDEMDLHLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARL-PCLCIYHK |
F.GFKCPVCSKFVPS.EMDLHLVMCLTKPRI.Y..DVLSK.AGE.AICLEELQQ...I..L..CLC.YHK | |
Retrocopy | FEGFKCPVCSKFVPSFEMDLHLVMCLTKPRIIYTVDVLSKGAGESAICLEELQQANSIV*L<TCLCMYHK |
Parental | GCIDEWFEVNRSCPEHPSD |
GCIDEWFE.N.SC.EHPSD | |
Retrocopy | GCIDEWFEGNGSCNEHPSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 4 .71 RPM |
SRP017611_liver | 0 .00 RPM | 11 .32 RPM |
SRP040447_lung | 0 .00 RPM | 1 .61 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 0 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000027612 | 1 retrocopy |
retro_cpor_922 ,
|
Felis catus | ENSFCAG00000026521 | 1 retrocopy |