>retro_dmel_24
ATGGCCGTTGTTTGGGACATGAGTCAATGGACGCAGGCGTGGCGGATCGACAGTCTGCATCCGACGGTCCGCTCGAGCGG
TACAAGAACCACAACGAGCGGTACAATCATGTACGGTCGCACGTCGGTCGGTGCAAATCAATCCGTGACGAATGGCAACT
CAAATAGTGGCGCAAATAGCGGCGGTGGTGCCAGTGGTGGTGCCCAGGGACACGATAAACTGAAAATTGGCTTCTGCACG
GACCTGGATAAATCGGTTTTGGTCAACAATTTCGAGAAACGTGGCTGGCATCAGGTGAATGGCGATGATGATTGGCATTT
CTATTGGGCCGGAGTGCAAACCTGCCGGAATATATTCAGTGTGGATAGTGGTTATAGGATGCACGATAACCAGATGATCA
ATCATTTTCCCAATCACTATGAATTATCACGCAAGGATTTACTGGTCAAGAACATCAAGCGTTATCGCAAGGATCTCGAG
AGGGATGGCAATCCATTGGCGGAGAAAACAGAGTCCAATAACTCCAGTGGCACCAGATATCTTTATTTGGATTTTGTGCC
AACAACTTTTGTCCTGCCAGCCGATTATAATATGTTCGTGGAGGAGTATCGCAAGTTTCCGCTGAGTACGTGGATTATGA
AACCCTGTGGAAAATCCCAAGGAGCGGGTATATTCCTTATAAACAAACTATCCAAACTCAAGAAGTGGTCAAGAGAGGCC
AAGGGTCCTTTTCATCCACAAATAGCCAAGGAATCGTATGTGATATCCAGATACATAGACAATCCACTATTGATTGGTGG
TAAAAAATTTGATCTTCGTCTATATGTTCTAGTCGCTTCGTTCAGACCCCTGAAAGCTTATCTTTTTAAGCAGGGATTCT
GCCGTTTTTGTACTGTAAAATACGATACTAGTGTTACGGAACTGGATAATATGTACGTCCATCTGACAAATGTGAGTGTG
CAGAAACATGGTGGCGAATACAATACCCTACATGGTGGCAAGTGGTCTGTACAAAATCTGGCCCTCTATTTGGAAGGAAC
TCGGGGAAAAGAGGTTACGGATCGTTTGTTTGGAGCCATATCCTGGCTTATAGTACACTCCTTAAGAGCTGTGGCTCCTG
TGATGGCCAGTGATAGGCATTGTTTTGAGTGTTATGGCTACGACATCATCATAGACAATGCCTTGAAACCTTGGCTAGTG
GAGGTGAATGCCTCACCGTCACTCACATCAACTACAGTAAACGACAGGATACTAAAATACAAACTGATTGACAACATACT
GTCCGTGGTCCTACCCCCCGATGGAGTGCCCGATGTGCGTTGGAATAAGGTTCCCAGTGCCGATGCTTTGGGCAACTTTG
AGCTGCTCATCGATGAGGAGTTGGCCGCCCAGGATGAACAACACCAAAATAGCAGCAGCAACACTCATAGTAAAACATCC
AAAATGGGCAGCCGATGGAAGTGA
ORF - retro_dmel_24 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.81 % |
Parental protein coverage: |
82.66 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IYYSTDWDKSALVSNFQKRGWLQVPSFNGEWNFYWACTQNCRYIFGIDHPYRMRSDQVINHFPNSIELSR |
| I...TD.DKS.LV.NF.KRGW.QV......W.FYWA..Q.CR.IF..D..YRM...Q.INHFPN..ELSR |
Retrocopy | IGFCTDLDKSVLVNNFEKRGWHQVNG-DDDWHFYWAGVQTCRNIFSVDSGYRMHDNQMINHFPNHYELSR |
|
Parental | KDLLIKNIKRYRKDLERRGDPLAQSHPPDTKLGIGGTRYKHLDIIPMTFVLPSDYQMFVEVFHRNPASTW |
| KDLL.KNIKRYRKDLER.G.PLA............GTRY..LD..P.TFVLP.DY.MFVE.....P.STW |
Retrocopy | KDLLVKNIKRYRKDLERDGNPLAEKTESNNS---SGTRYLYLDFVPTTFVLPADYNMFVEEYRKFPLSTW |
|
Parental | IVKPCSKSQGVGIYLVNKLSKLKKFAYDAR-TFYPQINRDTCVISKYIDNPLLIGGKKFDLRLFVLVTTF |
| I.KPC.KSQG.GI.L.NKLSKLKK....A...F.PQI.....VIS.YIDNPLLIGGKKFDLRL.VLV..F |
Retrocopy | IMKPCGKSQGAGIFLINKLSKLKKWSREAKGPFHPQIAKESYVISRYIDNPLLIGGKKFDLRLYVLVASF |
|
Parental | NPLKAYLYKEGFCRFCTEKYDE--TEIDNVFMHLTNVSIQKTNQEYNSIHGGKWPLQNLWLYLDSLRGEG |
| .PLKAYL.K.GFCRFCT.KYD...TE.DN...HLTNVS.QK...EYN..HGGKW..QNL.LYL...RG.. |
Retrocopy | RPLKAYLFKQGFCRFCTVKYDTSVTELDNMYVHLTNVSVQKHGGEYNTLHGGKWSVQNLALYLEGTRGKE |
|
Parental | VSDMLWSRITATIRHSLDAVAPVMANDRHCFEVYGYDIIIDNNLKPWLIEINTSPSMHSTTTNDRMLKSR |
| V.D.L...I...I.HSL.AVAPVMA.DRHCFE.YGYDIIIDN.LKPWL.E.N.SPS..STT.NDR.LK.. |
Retrocopy | VTDRLFGAISWLIVHSLRAVAPVMASDRHCFECYGYDIIIDNALKPWLVEVNASPSLTSTTVNDRILKYK |
|
Parental | LIDNVLDVVVPPNCMPNEHWDKTPNPELLKNFTVLMPISPCKPKEQVPVRRKGRLSKKKKSKS |
| LIDN.L.VV.PP...P...W.K.P....L.NF..L.........EQ.........SK..K..S |
Retrocopy | LIDNILSVVLPPDGVPDVRWNKVPSADALGNFELLIDEELAAQDEQHQNSSSNTHSKTSKMGS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_24 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_24 was not experimentally validated.
Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.