RetrogeneDB ID: retro_dmel_34

Retrocopy location

• Organism: Fruit fly (Drosophila melanogaster)
• Coordinates: X:18976837..18977212(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: FBgn0030982
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CG31715
• Ensembl ID: FBgn0051715
• Aliases: None
• Description: None

Sequence

>retro_dmel_34
ATGGGCGATGGACACAAAATCGAGGACATCATCTGGACAATCAAGAACGGCGTGTACGACGAGGTGGAGCGAATTTTCCT
AGCCGGATCGCTTAATGTGAACGATCAGATGGGCGTCCGGTTCCCCTTGCACTACGCCGCCGACTTTGGCCAGCTGAAGC
TGCTGGAGTTCTTTGTGCGGATCGGCGCGGAGGTGGACAGGAAGGACAAGTACGGCATCACACCGCTCCTGGCGGCCATA
TGGGAGGGGCATACACGCTGCGTCGAGTTCCTGCTCCGGATGGGAGCCAGCCGCACGGAGCGCACGCCCGAGGGGCAGAG
CTACGCGGAGGCCGCCGAGCAGGAGGACATTAGACGGCTCCTGGCGCGGGACTGA

Alignment

ORF - retro_dmel_34 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.74 %
• Parental protein coverage: 95.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EDIIWTIKNGEFDAVQDAFQNDAQKVNEEIKGRFPVHYAADFGQLNVLEFLISLGADINRKDKHGITPIL
          EDIIWTIKNG..D.V...F......VN.....RFP.HYAADFGQL..LEF....GA...RKDK.GITP.L
Retrocopy EDIIWTIKNGVYDEVERIFLAGSLNVNDQMGVRFPLHYAADFGQLKLLEFFVRIGAEVDRKDKYGITPLL

Parental  AAIWEGHTSCVELLLKMGADKNGSTPDGQSYLEAAEKDEIKKLLA
          AAIWEGHT.CVE.LL.MGA.....TP.GQSY.EAAE...I..LLA
Retrocopy AAIWEGHTRCVEFLLRMGASRTERTPEGQSYAEAAEQEDIRRLLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq

Drosophila melanogaster was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_dmel_34 retrocopy.

TSS

Drosophila melanogaster was not studied using FANTOM5 data.

Lab

retro_dmel_34 was not experimentally validated.

Homology

Retrocopy orthology:

Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000029544	1 retrocopy	retro_lafr_924,
Monodelphis domestica	ENSMODG00000013977	4 retrocopies	retro_mdom_132, retro_mdom_165, retro_mdom_1731, retro_mdom_247,
Oryctolagus cuniculus	ENSOCUG00000005642	4 retrocopies	retro_ocun_1746, retro_ocun_1830, retro_ocun_244, retro_ocun_993,
Drosophila melanogaster	FBgn0051715	1 retrocopy	retro_dmel_34 ,