RetrogeneDB ID:

retro_dmel_69

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:2R:13636522..13637560(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0034274
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:wds
Ensembl ID:FBgn0040066
Aliases:None
Description:will die slowly [Source:FlyBase gene name;Acc:FBgn0040066]


Retrocopy-Parental alignment summary:






>retro_dmel_69
ATGGAATTGATTGAAACAGCTTCGACTCCTGGAGATTCCGAAACTGAAATCGCCATCCCGGAGGCCGCTTTCGATTCCTT
TAAGATGCCTATGCTACCAAGTCAGTTCCATTTGGAGAACTCCATGTCTCCGGGCTACGCCATTAAGCACTCGCTCCTCG
GTCACAGTGGTTGCGTTACTGGTCTAAAGTTTAGTTCGAATGGCGAGAACTTGGTCAGCAGCTCCGGCGATAGGCTGCTT
AAGCTCTGGGACTTGAGCGCAACCCGATGCATTCAATCGCTGGCCGGGCACGGAGACGGAGTCAACGATGTCGCCTGGTC
GGCGGCTGGATTAATTGCCAGTTGTAGCGATGACATGACCGTGCGTCTCTGGGATGCCCGCAGCAAGCTCTGCGTCAAAG
TTTTGGAGGGGCATTCCAGGTACAGTTTCTCCTGCTGCTTTAATCCGCAGGCCAATCTGCTGGCCTCCACTAGCTTTGAC
GAAACAGTGCGCCTTTGGGATGTCCGCACTGGCAAAACGCTCAAAATCGTCCACGCCCACCAGGATCCCATAACATCGGT
GGACTTCCACCGCGATGGCAATATTTTTGTCACCAGCAGCTATGATGGGCTGGTCCGCTTGTGGGACTCTAGCACCGGGC
ATGTGCTGAAGACTCTCGTTGACGTTGACAACATCCCGGTCGGATATGTGAAGTTCTCACCGAACGGACGCTACATCCTG
TCGTCCACATTGAACAACACCCTTAGGCTATGGAACTACAAGAAGCCCAAGTGCATGAGGACCTATCGCGGGCATTTGAA
TGAGTTCTATTGCTCCAACTCCAATTTTTCCACCACCGGCGGCATTTGGATTGTCTCCGGCAGCGAGGATAATACGCTTT
GCATCTGGAATCTGCAGACGAGGGAGCTGGTGCAAAAGATAAGCACGGAGGGCGACCAGATTTTGAGCACACATTGCCAT
CCCACGGCAAATGTGATTGCTAGCGGCGCCCTACAAAATTCATATGCCATTAAAATCTGGAAGAGCAGCGAGAAGTAG

ORF - retro_dmel_69 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 55.45 %
Parental protein coverage: 83.93 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSVKPNYTLKFTLAGHTKAVSAVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS
S..P.Y..K..L.GH...V...KFS.NGE.L.SSS.D.L.K.W............GH..G..DVAWS...
RetrocopySMSPGYAIKHSLLGHSGCVTGLKFSSNGENLVSSSGDRLLKLWDLSATRCIQSLAGHGDGVNDVAWSA-A
ParentalRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPA
.L..S.SDD.T...W........K.L.GHS.Y.F.C.FNPQ.NL..S.SFDE.VR.WDVRTGK.LK...A
RetrocopyGLIASCSDDMTVRLWDARSKLCVKVLEGHSRYSFSCCFNPQANLLASTSFDETVRLWDVRTGKTLKIVHA
ParentalHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK
H.DP...V.F.RDG...V.SSYDGL.R.WD...G..LKTL.D.DN.PV..VKFSPNG.YIL..TL.NTL.
RetrocopyHQDPITSVDFHRDGNIFVTSSYDGLVRLWDSSTGHVLKTLVDVDNIPVGYVKFSPNGRYILSSTLNNTLR
ParentalLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSKEVVQKLQGHTDTVLCTAC
LW.Y.K.KC..TY.GH.NE.YC...NFS.TGG.WIVSGSEDN...IWNLQ..E.VQK.....D..L.T.C
RetrocopyLWNYKKPKCMRTYRGHLNEFYCSNSNFSTTGGIWIVSGSEDNTLCIWNLQTRELVQKISTEGDQILSTHC
ParentalHPTENIIASAALENDKTIKLWKS
HPT.N.IAS.AL.N...IK.WKS
RetrocopyHPTANVIASGALQNSYAIKIWKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Drosophila melanogaster was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Drosophila melanogaster was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_dmel_69 retrocopy.

TSS - click to see more details

Drosophila melanogaster was not studied using FANTOM5 data.

Lab - click to see more details

retro_dmel_69 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 27 parental genes, and 31 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000111791 retrocopy
retro_amel_29,
Bos taurus ENSBTAG000000470311 retrocopy
retro_btau_299,
Canis familiaris ENSCAFG000000198301 retrocopy
retro_cfam_128,
Callithrix jacchus ENSCJAG000000101231 retrocopy
retro_cjac_1,
Cavia porcellus ENSCPOG000000147901 retrocopy
retro_cpor_12,
Dipodomys ordii ENSDORG000000150101 retrocopy
retro_dord_7,
Equus caballus ENSECAG000000173891 retrocopy
retro_ecab_82,
Echinops telfairi ENSETEG000000157311 retrocopy
retro_etel_15,
Felis catus ENSFCAG000000057121 retrocopy
retro_fcat_119,
Homo sapiens ENSG000001963631 retrocopy
retro_hsap_11,
Gorilla gorilla ENSGGOG000000049972 retrocopies
retro_ggor_171, retro_ggor_2023,
Loxodonta africana ENSLAFG000000111921 retrocopy
retro_lafr_55,
Microcebus murinus ENSMICG000000080851 retrocopy
retro_mmur_34,
Myotis lucifugus ENSMLUG000000022361 retrocopy
retro_mluc_11,
Macaca mulatta ENSMMUG000000141591 retrocopy
retro_mmul_190,
Mustela putorius furoENSMPUG000000121841 retrocopy
retro_mputfur_2,
Mus musculus ENSMUSG000000269171 retrocopy
retro_mmus_132,
Nomascus leucogenys ENSNLEG000000134721 retrocopy
retro_nleu_63,
Otolemur garnettii ENSOGAG000000089601 retrocopy
retro_ogar_86,
Procavia capensis ENSPCAG000000134761 retrocopy
retro_pcap_43,
Pan troglodytes ENSPTRG000000236532 retrocopies
retro_ptro_18, retro_ptro_1975,
Pteropus vampyrus ENSPVAG000000016661 retrocopy
retro_pvam_112,
Rattus norvegicus ENSRNOG000000082121 retrocopy
retro_rnor_258,
Sarcophilus harrisii ENSSHAG000000139553 retrocopies
retro_shar_34, retro_shar_45, retro_shar_652,
Sus scrofa ENSSSCG000000249121 retrocopy
retro_sscr_1,
Ictidomys tridecemlineatus ENSSTOG000000158991 retrocopy
retro_itri_117,
Drosophila melanogaster FBgn0040066 1 retrocopy
retro_dmel_69 ,


Copyright © RetrogeneDB 2014-2017