RetrogeneDB ID: | retro_itri_117 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393346.1:8728740..8729676(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000027025 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR5 | ||
Ensembl ID: | ENSSTOG00000015899 | ||
Aliases: | None | ||
Description: | WD repeat domain 5 [Source:HGNC Symbol;Acc:12757] |
Percent Identity: | 86.86 % |
Parental protein coverage: | 93.41 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS |
SA..SK..P.KPNYALK.TL.GHT.AVSSVKFSPNG.WLASSSADKLI.IWGAYDGK.EKT..GH.L.IS | |
Retrocopy | SANHSKEAPEKPNYALKLTLVGHTAAVSSVKFSPNGKWLASSSADKLIIIWGAYDGKYEKTLYGHNLEIS |
Parental | DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG |
DVAWSSDS.LLVSASDDKTLKIWDV..GK.LKTL.GH.NYVFCCNFNP.SNLI.SGSFDESV.IW.VKTG | |
Retrocopy | DVAWSSDSSLLVSASDDKTLKIWDVRYGKRLKTLRGHRNYVFCCNFNPSSNLIISGSFDESVKIWEVKTG |
Parental | KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA |
KCLKTL.AHSDP.SAV.FN..GSLIVS.SYDGLCRIWD.ASGQCLKTLIDDDNPPVSFVKFSPNGKYIL. | |
Retrocopy | KCLKTLSAHSDPISAVQFNCNGSLIVSGSYDGLCRIWDAASGQCLKTLIDDDNPPVSFVKFSPNGKYILT |
Parental | ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT |
ATL.NTLKLWDYS.G.CLKTYTGHKNEKYCIF..FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT | |
Retrocopy | ATLNNTLKLWDYSRGRCLKTYTGHKNEKYCIFSSFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT |
Parental | DVVISTACHPTENIIASAALENDKTIKLWKSD |
DVVIS.ACHPTENIIASAALENDKTIKLW.S. | |
Retrocopy | DVVISAACHPTENIIASAALENDKTIKLWMSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |