RetrogeneDB ID:

retro_dmel_7

Retrocopy
location
Organism:Fruit fly (Drosophila melanogaster)
Coordinates:3L:11915835..11917791(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:FBgn0036222
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:SdhA
Ensembl ID:FBgn0261439
Aliases:None
Description:Succinate dehydrogenase A [Source:FlyBase gene name;Acc:FBgn0261439]


Retrocopy-Parental alignment summary:






>retro_dmel_7
ATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGCATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCA
AGTGTCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCACAAGTTCGATGCGATTGTCATTGGTG
CCGGTGGAGCTGGAATGCGGGCTGGATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTATTTCCC
ACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGCCCTCTCAAATATGGACAAGGACGACTGGAAGTACCA
CTTCTACGACACGGTGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGTCGGGAGGCGGAGAGGG
CGGTCTGCGAACTGGACATGTACGGGATGCCCTTCTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGT
CAGACCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCAGATCGCACGGGTCACGCCCTTATCCA
CACACTGTACGGACAAACGCTGAAGCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGATCATGT
CGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGATGGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTT
GTTGCCGCCGGCGGTTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCGATGGCAATGCGTGGGT
GTCTAGACAGGAGCTGCCGCTCATGGATATGGAATTTGTGCAGTTTCATCCCACTGGCATCTACGGAGCCGGATGCCTTA
TCACCGAGGGAGTTAGGGGCGAAGGCGGTTTCTTCTTGAACTGCAAGGGAGAACGTTTCATGGAACGCTATGCTCCAAAG
GCCAAGGATCTGGCGTCCAGAGATGTGGTGGCGCGGGCCATGACCATGGAGGTTCTTGCTGGCAATGGTTGTGGTCCGCT
CAAGGATCATGTGCACCTTCAGCTCCACCATATCGACGCCAAGATCATCAAGCAACGATTGCCGGGCATTATGGTCACCG
CCCGGATTTTTGCCAAAGTGGATGTGACCAAGGAACCAGTACCAGTGCTGCCAACTGTGCACTACAACATGGGCGGCATA
CCAACGGATTACAAGGGTCGTGTGGTCACCATCGATGAGAATGGCAAGGAACAGGTTGTCAAGGGACTGTACTCCTGCGG
GGAAACTTCCTGCGCCTCAGTACACGGAGCAAATCGATTGGGTGCCAACTCCCTGCTGGATCTGATCATCTTTGGCCGCG
TCTGTGCTCTGGACATTGCCGCAAACAACTGTCCGGGGGATAAGCCGCCCCAGGTGGAGGACAAAGCCACGGAGAAGTCG
CTGGATAATTTTAAGCGCCTGCGCTGCGCCGACGGATGCATTCCCACTGCGGTGTTGAGAATGGAACTTCAGCGGACCAT
GACCAAACATGCGGCTGTTTTCCGGGAGGGAAAACTGCTCAAGGAGGGTCTGCTCAAAGTGGCCGAGTTATGTGAACAGT
TCAAGGACATCAAGACAACCGATCGTACGATGGTGTGGAACTCCAACCTAGTTGAGACGCTAGAGCTGCAGAATATGCTA
GCCAATGCGGTGCACATCATTACAGCCATGGAAAATCGCAAGGAGTCGAGGGGCTCCCATGCTCGCGAGGATTTCAAGAC
GCGCGTGGATGAGCTGGACTATGGAGCACCACTGGCCGGACAGAAAAAGAAACCATTCGAGGAGCATTGGCGCAAGCACA
CCATGACCTTTGCACTGGGTAACAAAGGATGTGCATCGATCAAATATCGCCCGGTTGTGGACACCACCTTGGACAGCTCC
GTTGCACCCATTCCACCTGCTCCGCGCACCTACTGA

ORF - retro_dmel_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.68 %
Parental protein coverage: 94.25 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalQASAANPDKISKQYPVVDHAYDAIVVGAGGAGLRAAFGLVAEGFRTAVITKLFPTRSHTIAAQGGINAAL
Q.S..........Y...DH..DAIV.GAGGAG.RA.FGL...GF.TA.I.KLFPTRSHT.AAQGG.NAAL
RetrocopyQVSCVRDASCKDEYSLIDHKFDAIVIGAGGAGMRAGFGLAEKGFQTAIISKLFPTRSHTVAAQGGVNAAL
ParentalGNMEEDDWKWHMYDTVKGSDWLGDQDAIHYMTREAPKAVIELENYGMPFSRTQDGKIYQRAFGGQSLKFG
.NM..DDWK.H.YDTVKGSDWLGDQ.AIHYM.REA..AV.EL..YGMPFSR..DGKIYQR.FGGQ.L..G
RetrocopySNMDKDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVCELDMYGMPFSRKPDGKIYQRPFGGQTLDYG
ParentalKGGQAHRCCAVADRTGHSLLHTLYGQSLSYD--CNYFVEYFALDLIFEDGECRGVLALNLEDGTLHRFRA
KGG.A.R.CA.ADRTGH.L.HTLYGQ.L.....C.YFV.YF.LDLI...G.C.G.LA..L.DGT.HRF.A
RetrocopyKGGVARRACACADRTGHALIHTLYGQTLKHSDSCHYFVDYFVLDLIMSQGACVGCLAWKLDDGTFHRFLA
ParentalKNTVIATGGYGRAFFSCTSAHTCTGDGTAMVARQGLPSQDLEFVQFHPTGIYGAGCLITEGCRGEGGYLI
KNTV.A.GG.GR..FS.T..HTCTGDG.A.V.RQ.LP..D.EFVQFHPTGIYGAGCLITEG.RGEGG...
RetrocopyKNTVVAAGGCGRVYFSTTAGHTCTGDGNAWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRGEGGFFL
ParentalNGNGERFMERYAPVAKDLASRDVVSRSMTIEIMEGRGAGPEKDHVYLQLHHLPPKQLAERLPGISETAMI
N..GERFMERYAP.AKDLASRDVV.R.MT.E...G.G.GP.KDHV.LQLHH...K....RLPGI..TA.I
RetrocopyNCKGERFMERYAPKAKDLASRDVVARAMTMEVLAGNGCGPLKDHVHLQLHHIDAKIIKQRLPGIMVTARI
ParentalFAGVDVTREPIPVLPTVHYNMGGVPTNYRGQVITIDKDGKDVIVPGLYAAGEAASSSVHGANRLGANSLL
FA.VDVT.EP.PVLPTVHYNMGG.PT.Y.G.V.TID..GK...V.GLY..GE....SVHGANRLGANSLL
RetrocopyFAKVDVTKEPVPVLPTVHYNMGGIPTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLL
ParentalDLVVFGRACAKTIAELNKPGAPAPTLKENAGEASVANLDKLRHANGQITTADLRLKMQKTMQHHAAVFRD
DL..FGR.CA..IA..N.PG...P.....A.E.S..N...LR.A.G.I.TA.LR...Q.TM..HAAVFR.
RetrocopyDLIIFGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLRMELQRTMTKHAAVFRE
ParentalGPILQDGVNKMKEIYKQFKDIKVVDRSLIWNSDLVETLELQNLLANAQMTIVSAEARKESRGAHAREDFK
G..L..G..K..E...QFKDIK..DR...WNS.LVETLELQN.LANA...I...E.RKESRG.HAREDFK
RetrocopyGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNLVETLELQNMLANAVHIITAMENRKESRGSHAREDFK
ParentalVREDEYDFSKPLDGQQKKPMDQHWRKHTLSWVCNDNGDITLDYRNVIDTTLDNEVSTVPPAIRSY
.R.DE.D...PL.GQ.KKP...HWRKHT........G.....YR.V.DTTLD..V...PPA.R.Y
RetrocopyTRVDELDYGAPLAGQKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRTY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Drosophila melanogaster was not studied using RNA-Seq expression data.
Drosophila melanogaster was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_dmel_7 retrocopy.
Drosophila melanogaster was not studied using FANTOM5 data.
retro_dmel_7 was not experimentally validated.

Retrocopy orthology:
Drosophila melanogaster does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Nomascus leucogenys ENSNLEG000000012921 retrocopy
Ornithorhynchus anatinus ENSOANG000000101571 retrocopy
Xenopus tropicalis ENSXETG000000234081 retrocopy
Drosophila melanogaster FBgn0261439 1 retrocopy
retro_dmel_7 ,



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