>retro_dnov_1210
AAGGCGGCGGCACTGAACTCGGCTCTCCAGAGCCCCGCGCAGAGGCCTCCAGGTTTCACTGTGGCCCAGAAGCTATTTGG
AGCCACATATATATGGAGCAGCATTATAAGCACCCTTCACGCACAGGTGGAAGTGAAGAGACGAAGACACCATTTAAAAT
GGCACAATGACTGCTTTGTTGGTTCAGAAGCTGTGGATGTCATTTTTTCTCACCTAATTCAGAATAAGTATTTTGGTGAT
GTAGATATTCCTCGGGCCAAAGTGGTGAAAGTGTGTCAAGCACTTACGGACTACAAAGTGTTTGAAGCAGTTCCAACCAA
AGTCTTTGGAAAAGACAAAAAACCTACATTTGAAGATAGTAGTTGCAGCCTTTATAGGTTTACCACAATACCTGACAAAA
GACAGTCAGTTAGGCAAAGAGAACAAACTATATTCACCTTCCAGGTATGCAGAAGCATTATTTAAGTCATCTGATTTGAA
ATCAGCAAGTTTAGAGGATCTGTGGAAAAATCTGAGTTTAAAGCCAGCTAACTTCCCTAATGTAAATAGCTCTACAACCC
TGTCTCCAGAAGTTATTAATGAAGTATGGCAAGAGGAAACAATTGGGCGCCTATTACAACTTGTAGACCTTCCACTTCTT
GAGTCCTTACTCAAACAGCAAGAGGTTGTACCTAAAGTTCCTCAACCCAAGAGGCATCCTGACTTGATCTACGATAGTAG
CTATCTGGATCGAGGGATTCTCAAGGCTTATAGCGACTCT
ORF - retro_dnov_1210 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.21 % |
Parental protein coverage: |
50.9 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | KTAAPKADTPSPSALCPKPPXXXVAQKPFGATYIWSSIISTLHAQVEVKRRRHHLKRHNDCFVGSEAVDV |
| K.AA......SP......PP...VAQK.FGATYIWSSIISTLHAQVEVKRRRHHLK.HNDCFVGSEAVDV |
Retrocopy | KAAALNSALQSPAQ---RPPGFTVAQKLFGATYIWSSIISTLHAQVEVKRRRHHLKWHNDCFVGSEAVDV |
|
Parental | IFSHLIQNKYFGDVDIPRAKVVKVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPD-QDSQ |
| IFSHLIQNKYFGDVDIPRAKVVKVCQAL.DYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPD..DSQ |
Retrocopy | IFSHLIQNKYFGDVDIPRAKVVKVCQALTDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPD>KDSQ |
|
Parental | LGKENKLYSPSRYAEALFKSSDLKSASL-DLWKNLSLKPANFPXXXXXXXXXXXXIGEVWREETIGRLLQ |
| LGKENKLYSPSRYAEALFKSSDLKSASL.DLWKNLSLKPANFP............I.EVW.EETIGRLLQ |
Retrocopy | LGKENKLYSPSRYAEALFKSSDLKSASLEDLWKNLSLKPANFPNVNSSTTLSPEVINEVWQEETIGRLLQ |
|
Parental | LVDLPLLESLLRQQEVVPKVPQPKRPPDLIYDSSYLDRGILKAYSDS |
| LVDLPLLESLL.QQEVVPKVPQPKR.PDLIYDSSYLDRGILKAYSDS |
Retrocopy | LVDLPLLESLLKQQEVVPKVPQPKRHPDLIYDSSYLDRGILKAYSDS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
4 .47 RPM |
3 .11 RPM |
SRP012922_cerebellum |
0 .14 RPM |
0 .14 RPM |
SRP012922_heart |
0 .00 RPM |
0 .00 RPM |
SRP012922_kidney |
0 .55 RPM |
3 .01 RPM |
SRP012922_liver |
10 .53 RPM |
8 .98 RPM |
SRP012922_lung |
0 .92 RPM |
0 .15 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .17 RPM |
SRP012922_spleen |
0 .23 RPM |
0 .00 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1210 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.