>retro_etel_1447
TTCACAACGGTGCCCAATCAAGACAGTCCATCGGGCAAGGAGAACCAACTTCACTCGCCTTCTCGGGATGCGGGTGCATT
ATTTAAATCATCTGATATCAAATCGGCAAGTTTAGAGGATCTCTGGGAAAATCTGAGTTTAAAGCCCACAAACTCCCCTC
ATGTGAATCTCTCTGCAACCCTGTCTCCAAAAGTGATTAATGAAGTATGGCAAGAAGAAACGATTGGGCGTCTACTTCAA
CTTGTGGACCTTTCCCTTCTTGACTCCTTGCTCAAACAGCGAGACATTGTTCCTAAAGCTCTTCAACCCACGAGGCAGCC
TGACTTGATCTACAACAGTAGCTATCTGGACCGAAGGATTCTCAAGGCTTATAGTGACGCTCAGGAAGATGAGTGGCTCT
CTGCAGCTACTGACTGCGTGGAGTACCTTCCCGACCAGATGGTGGTGGACATAAGCAGAAACTTTCCTGAGCAGCCACAT
AGAACAGACATCGTGAAAGGACTTTTGTTTGATGCCATTGGCAGCTATTACAGTCACAGGGCGCCTCTGTTGAATCACTT
ATCCGATGTCCATAATGGAATTGCCGAACTCTTAGTGAATGGGAACACTGAAATAGCACTGGAAGCTACACAGCTCTTTC
TGAAGCTTTTGGATTCCCCAAACCGAGAAGAATTTAGAAGACTGCTGTATTTCATGGCTGTGCGCCGCACATCCTTCCGA
GTTCAAATTACAGAAAGAAAGTGACAATCGAATGGTTGTAAAAAGGATATTCTCAAAAGCAATTGTTGACAATAAAAATT
TATGCAAAGGCAAGACTGATCTTCTAGTACTCTTTTTAATGGATCATCAAAAAGATGTTTTTAAGATTCCTGGAACTCTA
CATAAAATTGTCAGTGTGAAGCTCATGGCCTTACAAGAGGGGAGAGATCCAAACAGTGAAGCAGGGTATATATATTGCCA
GAGAATGGATCAAATGGACTATCCCAACAGTACACAGAAGACAACCAAAGATGAGCTGCTGAATTTAGTTAAAACTATTG
ATGAGGATTCAAAACTATCTGCCAAAGAGAAGAAAAAATTACTAGGTCAGTTCTATAAGAGCCACCCGAACATTTTTATT
GAGTATTTTGGAGCC
ORF - retro_etel_1447 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.63 % |
Parental protein coverage: |
73.4 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | FTTVPNQDRPSGKENQLHSPSRDAGALFKSSDIKSASLEDLWENLSLKPTNSPHVSLSATLSPKVINEVW |
| FTTVPNQD.PSGKENQLHSPSRDAGALFKSSDIKSASLEDLWENLSLKPTNSPHV.LSATLSPKVINEVW |
Retrocopy | FTTVPNQDSPSGKENQLHSPSRDAGALFKSSDIKSASLEDLWENLSLKPTNSPHVNLSATLSPKVINEVW |
|
Parental | QEETIGRLLQLVDLSLLDSLLKQRDIVPKAPQPTRQPDLIYNSSYLDRRILKAYSDAQEDEWLSAAIDCL |
| QEETIGRLLQLVDLSLLDSLLKQRDIVPKA.QPTRQPDLIYNSSYLDRRILKAYSDAQEDEWLSAA.DC. |
Retrocopy | QEETIGRLLQLVDLSLLDSLLKQRDIVPKALQPTRQPDLIYNSSYLDRRILKAYSDAQEDEWLSAATDCV |
|
Parental | EYLPDQMVVDISRNFPEQPHRTDIVKGLLFDAIGSYYSHRAPLLNHLSDVHNGIAELLVNGKTEVALEAT |
| EYLPDQMVVDISRNFPEQPHRTDIVKGLLFDAIGSYYSHRAPLLNHLSDVHNGIAELLVNG.TE.ALEAT |
Retrocopy | EYLPDQMVVDISRNFPEQPHRTDIVKGLLFDAIGSYYSHRAPLLNHLSDVHNGIAELLVNGNTEIALEAT |
|
Parental | QLFLKLLDSPNREEFRRLLYFMAV-AAHPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFL |
| QLFLKLLDSPNREEFRRLLYFMAV.AAHPSEFKLQKESDNRMVVKRIFSKAIVDNKNL.KGKTDLLVLFL |
Retrocopy | QLFLKLLDSPNREEFRRLLYFMAV>AAHPSEFKLQKESDNRMVVKRIFSKAIVDNKNLCKGKTDLLVLFL |
|
Parental | MDHQKDVFKIPGTLHKIVSVKLMALQEGRDPNSEAGYIYCQRMDQMDYPNSTQKTTKDELLNLVKTIDED |
| MDHQKDVFKIPGTLHKIVSVKLMALQEGRDPNSEAGYIYCQRMDQMDYPNSTQKTTKDELLNLVKTIDED |
Retrocopy | MDHQKDVFKIPGTLHKIVSVKLMALQEGRDPNSEAGYIYCQRMDQMDYPNSTQKTTKDELLNLVKTIDED |
|
Parental | SKLSAKEKKKLLGQFYKSHPNIFIEYFGA |
| SKLSAKEKKKLLGQFYKSHPNIFIEYFGA |
Retrocopy | SKLSAKEKKKLLGQFYKSHPNIFIEYFGA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1447 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.