RetrogeneDB ID: | retro_dnov_1528 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22699:48614..48935(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LEPROTL1 | ||
Ensembl ID: | ENSDNOG00000014538 | ||
Aliases: | None | ||
Description: | leptin receptor overlapping transcript-like 1 [Source:HGNC Symbol;Acc:6555] |
Percent Identity: | 57.41 % |
Parental protein coverage: | 86.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LISLSFGGAIGLMFLMLGCALPIYNQYWPLFVLFFYVLSPIPYCIARRLVDDTDAMSNACKELAIFLTTG |
L..LSF.GA.GL..LMLG.AL..Y..YWP.FVL.F...SPIP...A.R...D.DA.S.AC..LA.F.TTG | |
Retrocopy | LVALSFSGATGLTLLMLGYAL*DYGIYWPSFVLIFHTISPIPHFLAKRATYDSDATSSACWGLAYFFTTG |
Parental | IVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATIL |
I.VSAFG.P...AR...I..GAC.LVL.GN.VIF...L | |
Retrocopy | I-VSAFGFPVTLARMVGIRCGACGLVLAGNAVIFPLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 25 .86 RPM |
SRP012922_cerebellum | 0 .00 RPM | 13 .88 RPM |
SRP012922_heart | 0 .00 RPM | 9 .51 RPM |
SRP012922_kidney | 0 .00 RPM | 26 .56 RPM |
SRP012922_liver | 0 .00 RPM | 19 .35 RPM |
SRP012922_lung | 0 .00 RPM | 33 .14 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 6 .40 RPM |
SRP012922_spleen | 0 .00 RPM | 57 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006530 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012299 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014538 | 3 retrocopies |
retro_dnov_1528 , retro_dnov_2606, retro_dnov_876,
|
Erinaceus europaeus | ENSEEUG00000001360 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013931 | 1 retrocopy |