RetrogeneDB ID: | retro_ocun_832 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:46682829..46683195(-) | ||
Located in intron of: | ENSOCUG00000005671 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LEPROTL1 | ||
Ensembl ID: | ENSOCUG00000013931 | ||
Aliases: | None | ||
Description: | leptin receptor overlapping transcript-like 1 [Source:HGNC Symbol;Acc:6555] |
Percent Identity: | 67.46 % |
Parental protein coverage: | 94.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | ALISL-SFGGAIGLMFLMLGCALPIYNQ-YWPLFVLFFYVLSPIPYCIARRLVDDTDAMSNACKELAIFL |
ALIS..SFG...G..FLMLGCALPIYNQ...P....F..V.S.IP.C.AR.LVDDTDAMSNACKEL..FL | |
Retrocopy | ALISF<SFG*TTGMVFLMLGCALPIYNQ>SCPIVLFFCIV-SLIPLCVARSLVDDTDAMSNACKEL-VFL |
Parental | TTGIVVSAFGLPIVFARAHLIEWGACALVLTGNTVIFATILGFFLVFGSNDDFSWQ |
..GIVVS.FG..I.F.R.H.IEWGA.ALVLTGN.VIFA..L.F.LV.G.ND.FSWQ | |
Retrocopy | IRGIVVSVFGILIIFSREHVIEWGA*ALVLTGNIVIFASSLDFLLVSGNNDNFSWQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .22 RPM | 15 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .77 RPM |
SRP017611_liver | 0 .00 RPM | 5 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000006530 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012299 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000014538 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000001360 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000013931 | 1 retrocopy |
retro_ocun_832 ,
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