RetrogeneDB ID: | retro_dnov_1549 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_23283:15075..15375(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000015517 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.24 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VKARGDETVVADLLVKFVYVIGAILKILLCEGNILN-HSGMNIEK-DPEHDQHDHSPNAEDDAAGGQLGP |
VKARGDETVV.DL.VK.VYVIGAI.KILLCEGNILN.HSGMNIEK.DP.HDQHDH.PNAED.AAGGQLGP | |
Retrocopy | VKARGDETVVVDLWVKVVYVIGAIHKILLCEGNILN*HSGMNIEK<DPKHDQHDHPPNAEDEAAGGQLGP |
Parental | TAQERRHEAASG-SARCGPSGKATRGSPGSAG |
TAQERRHEAASG.SA.CGPSGKAT.GSPGSAG | |
Retrocopy | TAQERRHEAASG>SAWCGPSGKATGGSPGSAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 46 .87 RPM |
SRP012922_cerebellum | 0 .00 RPM | 78 .08 RPM |
SRP012922_heart | 0 .00 RPM | 27 .61 RPM |
SRP012922_kidney | 0 .00 RPM | 172 .76 RPM |
SRP012922_liver | 0 .15 RPM | 32 .04 RPM |
SRP012922_lung | 0 .00 RPM | 65 .52 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 20 .94 RPM |
SRP012922_spleen | 0 .00 RPM | 50 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000015517 | 1 retrocopy |
retro_dnov_1549 ,
|
Microcebus murinus | ENSMICG00000014057 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006901 | 2 retrocopies |