RetrogeneDB ID: | retro_dnov_1772 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_29325:19440..19942(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DAZAP2 | ||
Ensembl ID: | ENSDNOG00000009306 | ||
Aliases: | None | ||
Description: | DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684] |
Percent Identity: | 79.76 % |
Parental protein coverage: | 99.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAP-PAYSEXXXXXXVHPGAATVPTMSAAFPGASL |
NSKGQYP.QP..PVQPPGNP.YPQTLH.PQAPPYTDAP.PAYSE........PGAAT.PT.SAA.PG.SL | |
Retrocopy | NSKGQYPKQPP*PVQPPGNPGYPQTLHFPQAPPYTDAP>PAYSELCGPSFLYPGAATGPTISAACPGTSL |
Parental | YLPMAQSVAIGPLGSTIPMAYYPVGPIYPPGSAVLVEGGYDTGARFGAAATAGNIPPPPPGCPPNAAQLA |
YL.MAQSV.IGPLGSTIP.AYYPVGPIYPPGSAVLV.GG.DTGARFGAAA.AGN.PPPPPGC.P...QLA | |
Retrocopy | YLLMAQSVTIGPLGSTIPRAYYPVGPIYPPGSAVLVGGGHDTGARFGAAAAAGNSPPPPPGCLPSGTQLA |
Parental | VMQGANVLVTQRKGNFFMGGSDGGYTIW |
VMQGANVLVT.RKGNFF.GGS.G.Y.IW | |
Retrocopy | VMQGANVLVT*RKGNFFVGGSEGDYVIW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 137 .29 RPM |
SRP012922_cerebellum | 0 .14 RPM | 80 .97 RPM |
SRP012922_heart | 0 .00 RPM | 33 .88 RPM |
SRP012922_kidney | 0 .00 RPM | 80 .22 RPM |
SRP012922_liver | 0 .00 RPM | 54 .96 RPM |
SRP012922_lung | 0 .15 RPM | 123 .10 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 37 .21 RPM |
SRP012922_spleen | 0 .00 RPM | 138 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000298 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009306 | 1 retrocopy |
retro_dnov_1772 ,
|
Equus caballus | ENSECAG00000007313 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009959 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000346 | 1 retrocopy | |
Sorex araneus | ENSSARG00000003823 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013232 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001156 | 2 retrocopies |