RetrogeneDB ID:

retro_dnov_1772

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_29325:19440..19942(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:DAZAP2
Ensembl ID:ENSDNOG00000009306
Aliases:None
Description:DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684]


Retrocopy-Parental alignment summary:






>retro_dnov_1772
AACAGCAAAGGTCAATATCCAAAGCAGCCACCCTAACCTGTGCAGCCTCCTGGGAATCCAGGGTACCCTCAAACCTTGCA
CTTTCCTCAGGCTCCACCCTATACCGATGCTCCAACCTGCTTACTCAGAGCTCTGTGGTCCAAGTTTTCTGTACCCAGGG
GCCGCCACAGGGCCTACTATATCAGCTGCATGTCCTGGCACCTCGCTCTATCTTCTCATGGCCCAGTCTGTGACTATTGG
ACCTTTGGGATCTACAATCCCCAGGGCTTATTATCCAGTTGGTCCCATCTATCCACCTGGCTCAGCAGTGCTGGTGGGAG
GAGGCCATGACACAGGTGCCAGATTTGGAGCTGCAGCGGCTGCTGGCAACAGTCCTCCTCCACCCCCTGGATGCCTTCCC
AGTGGCACTCAGCTTGCAGTCATGCAGGGAGCCAACGTCCTCGTAACTTAGCGGAAGGGAAACTTCTTTGTGGGTGGCTC
AGAAGGTGACTACGTCATCTGG

ORF - retro_dnov_1772 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 79.76 %
Parental protein coverage: 99.4 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAP-PAYSEXXXXXXVHPGAATVPTMSAAFPGASL
NSKGQYP.QP..PVQPPGNP.YPQTLH.PQAPPYTDAP.PAYSE........PGAAT.PT.SAA.PG.SL
RetrocopyNSKGQYPKQPP*PVQPPGNPGYPQTLHFPQAPPYTDAP>PAYSELCGPSFLYPGAATGPTISAACPGTSL
ParentalYLPMAQSVAIGPLGSTIPMAYYPVGPIYPPGSAVLVEGGYDTGARFGAAATAGNIPPPPPGCPPNAAQLA
YL.MAQSV.IGPLGSTIP.AYYPVGPIYPPGSAVLV.GG.DTGARFGAAA.AGN.PPPPPGC.P...QLA
RetrocopyYLLMAQSVTIGPLGSTIPRAYYPVGPIYPPGSAVLVGGGHDTGARFGAAAAAGNSPPPPPGCLPSGTQLA
ParentalVMQGANVLVTQRKGNFFMGGSDGGYTIW
VMQGANVLVT.RKGNFF.GGS.G.Y.IW
RetrocopyVMQGANVLVT*RKGNFFVGGSEGDYVIW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .00 RPM 137 .29 RPM
SRP012922_cerebellum 0 .14 RPM 80 .97 RPM
SRP012922_heart 0 .00 RPM 33 .88 RPM
SRP012922_kidney 0 .00 RPM 80 .22 RPM
SRP012922_liver 0 .00 RPM 54 .96 RPM
SRP012922_lung 0 .15 RPM 123 .10 RPM
SRP012922_quadricep_muscle 0 .00 RPM 37 .21 RPM
SRP012922_spleen 0 .00 RPM 138 .61 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_1772 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000002981 retrocopy
Dasypus novemcinctus ENSDNOG00000009306 1 retrocopy
retro_dnov_1772 ,
Equus caballus ENSECAG000000073131 retrocopy
Myotis lucifugus ENSMLUG000000099591 retrocopy
Mus musculus ENSMUSG000000003461 retrocopy
Sorex araneus ENSSARG000000038231 retrocopy
Tupaia belangeri ENSTBEG000000132321 retrocopy
Vicugna pacos ENSVPAG000000011562 retrocopies



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