RetrogeneDB ID: retro_sara_632

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_245191:137013..137271(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DAZAP2
• Ensembl ID: ENSSARG00000003823
• Aliases: None
• Description: DAZ associated protein 2 [Source:HGNC Symbol;Acc:2684]

Sequence

>retro_sara_632
ATGAACAGCAAATGTCAATATTCCACACAGCCGACCTACCTGGGGTAGCCTTCTGGAAATCCAGTGGACCTTCTTATCCT
GCATTTTTCCTCAGGATCCTCCCTATACTGATGCTCCACAGGCCTATCAGACCTTTGTCTTCTGAGCTTTCTACATCTGG
GGGCTGCCACAGTGCCCACCAGGTCAACTGTTCTTCCTATCAATTCACTATACCTTCCCATGGCCCAGTCTGTGTATGTT
GCTCCTTTAGGTACTACA

Alignment

ORF - retro_sara_632 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.36 %
• Parental protein coverage: 51.19 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MNSKGQYPTQPTYPVQPPGNPVYPQALHL-PQAPPYTDAPPAY-SELYRPSFVHPGAAXXXTMSAAFPGT
          MNSK.QY.TQPTY...P.GNPV....LH..PQ.PPYTDAP.AY.S.L...SF.H.GAA...T.S...P..
Retrocopy MNSKCQYSTQPTYLG*PSGNPVDLLILHF>PQDPPYTDAPQAY<SDLCLLSFLHLGAATVPTRSTVLPIN

Parental  SLYIPMAQSVAVGPLGST
          SLY.PMAQSV.V.PLG.T
Retrocopy SLYLPMAQSVYVAPLGTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_632 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000298	1 retrocopy	retro_chof_85,
Dasypus novemcinctus	ENSDNOG00000009306	1 retrocopy	retro_dnov_1772,
Equus caballus	ENSECAG00000007313	1 retrocopy	retro_ecab_286,
Myotis lucifugus	ENSMLUG00000009959	1 retrocopy	retro_mluc_351,
Mus musculus	ENSMUSG00000000346	1 retrocopy	retro_mmus_1073,
Sorex araneus	ENSSARG00000003823	1 retrocopy	retro_sara_632 ,
Tupaia belangeri	ENSTBEG00000013232	1 retrocopy	retro_tbel_3228,
Vicugna pacos	ENSVPAG00000001156	2 retrocopies	retro_vpac_314, retro_vpac_568,