RetrogeneDB ID: | retro_dnov_1802 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_31163:10035..10762(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CTDNEP1 | ||
Ensembl ID: | ENSDNOG00000013673 | ||
Aliases: | None | ||
Description: | CTD nuclear envelope phosphatase 1 [Source:HGNC Symbol;Acc:19085] |
Percent Identity: | 86.94 % |
Parental protein coverage: | 99.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MMRTQCLLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSRNRLGQVKRKILVLDLDE |
MM.TQCLLGL.TFVAF..KLWSFFIYLL.R.I..VIQYQTV.YDILPLSPV..N.LGQVKRKILVLDLDE | |
Retrocopy | MMWTQCLLGLHTFVAFTTKLWSFFIYLL*R*ILMVIQYQTVQYDILPLSPVTQNWLGQVKRKILVLDLDE |
Parental | TL-IHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVS-QWYELVVFTASMEIYD |
TL.IHSHHDGV.RPTV.PGTPPDFILK.VIDKHPV.FFVHKRPH.DFFLEVVS..WYELV.FTASMEIY. | |
Retrocopy | TL<IHSHHDGVPRPTVWPGTPPDFILKAVIDKHPVWFFVHKRPHEDFFLEVVS<LWYELVLFTASMEIYG |
Parental | SAVTDKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSD |
S.VTDKLDNSRSILKRRYYRQHCT.ELGSYIKDL.VVHSDLSSIVILDN.PGAYRSHPDNAIPIKSWFSD | |
Retrocopy | STVTDKLDNSRSILKRRYYRQHCTSELGSYIKDLFVVHSDLSSIVILDNYPGAYRSHPDNAIPIKSWFSD |
Parental | PSDTALLNLLPMLDALRFTADVRSVLSRNLHQHRL |
PSD.ALLNLL.MLD.LRFTA.VRS.LS.NLHQHRL | |
Retrocopy | PSDIALLNLLQMLDTLRFTANVRSMLSQNLHQHRL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 41 .42 RPM |
SRP012922_cerebellum | 0 .55 RPM | 42 .20 RPM |
SRP012922_heart | 0 .00 RPM | 15 .78 RPM |
SRP012922_kidney | 0 .27 RPM | 51 .75 RPM |
SRP012922_liver | 0 .00 RPM | 13 .78 RPM |
SRP012922_lung | 0 .61 RPM | 51 .16 RPM |
SRP012922_quadricep_muscle | 0 .69 RPM | 90 .52 RPM |
SRP012922_spleen | 0 .23 RPM | 53 .80 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019443 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013673 | 2 retrocopies |
retro_dnov_1802 , retro_dnov_2494,
|
Echinops telfairi | ENSETEG00000004654 | 1 retrocopy | |
Homo sapiens | ENSG00000175826 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000013777 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000010547 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004389 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000007902 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000008668 | 2 retrocopies | |
Drosophila melanogaster | FBgn0029067 | 1 retrocopy |