RetrogeneDB ID: | retro_dnov_1804 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_31206:21332..21866(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1B | ||
Ensembl ID: | ENSDNOG00000013784 | ||
Aliases: | None | ||
Description: | SAR1 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10535] |
Percent Identity: | 83.15 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVPRR-VWKNYL |
LYKK.GKLVFLGLDNAGKTTLL.MLKDDRLGQH.P.LHPTSEELTIAGMTFTTFDLGGH.....VWKNYL | |
Retrocopy | LYKKSGKLVFLGLDNAGKTTLLPMLKDDRLGQHIPMLHPTSEELTIAGMTFTTFDLGGHEQAHWVWKNYL |
Parental | PAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK |
PAINGIVFLVDCADH..L.ESK.EL..LMTDETI.NVPIL.LGNKI.R..AISEE.LRE.FGLYGQTTGK | |
Retrocopy | PAINGIVFLVDCADHSCLMESKVELNALMTDETIYNVPILFLGNKINRTDAISEEKLREIFGLYGQTTGK |
Parental | GNVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID |
GNV.LKELNA.P.EVFMC..LKRQGYGEGFRW...YID | |
Retrocopy | GNVTLKELNASPMEVFMCRLLKRQGYGEGFRWLSRYID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 4 .86 RPM | 19 .06 RPM |
SRP012922_cerebellum | 2 .75 RPM | 8 .66 RPM |
SRP012922_heart | 2 .09 RPM | 15 .78 RPM |
SRP012922_kidney | 0 .82 RPM | 17 .25 RPM |
SRP012922_liver | 2 .94 RPM | 28 .48 RPM |
SRP012922_lung | 3 .05 RPM | 13 .59 RPM |
SRP012922_quadricep_muscle | 4 .15 RPM | 43 .27 RPM |
SRP012922_spleen | 5 .04 RPM | 16 .14 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017849 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013784 | 3 retrocopies |
retro_dnov_1584, retro_dnov_1804 , retro_dnov_919,
|
Equus caballus | ENSECAG00000012409 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001021 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004417 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008250 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013347 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000012433 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011326 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016864 | 2 retrocopies |