RetrogeneDB ID: | retro_itri_1714 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393652.1:757048..757438(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAR1B | ||
Ensembl ID: | ENSSTOG00000011326 | ||
Aliases: | None | ||
Description: | SAR1 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10535] |
Percent Identity: | 83.08 % |
Parental protein coverage: | 65.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR |
MTFTTFDLGGHVQA.RVWKN.LPA..GIVFLVDC..HERLLESKEE.D.LMTD.TIANVPILILGNK.DR | |
Retrocopy | MTFTTFDLGGHVQA*RVWKNCLPAVKGIVFLVDCIAHERLLESKEEFDLLMTDDTIANVPILILGNKTDR |
Parental | PEAISEERLREMFGLYGQTTGKGGVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID |
PEAISEERL.EMFGLY.QT.GKG.VSLK.LNA..LEVFM....KRQGYGEGFRWM.QYID | |
Retrocopy | PEAISEERLKEMFGLYTQTIGKGSVSLKDLNAGHLEVFM*NAPKRQGYGEGFRWMVQYID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000013784 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000001021 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013347 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011326 | 1 retrocopy |
retro_itri_1714 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000012780 | 2 retrocopies |