RetrogeneDB ID: | retro_dnov_2 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_22197:20866..21325(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000024769 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000019742 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.35 % |
Parental protein coverage: | 77.72 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQHIRKLIKDGLIIRKPVTVHSRARCLKNTLARRK |
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQ.IRKLIKDGLIIRKPVTVHSRARC.KNTLARRK | |
Retrocopy | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK |
Parental | GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGN-FKNRRILMEHI |
GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGN.FKN.RILMEHI | |
Retrocopy | GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHI |
Parental | HKLKADKARKK |
HKLKADKARKK | |
Retrocopy | HKLKADKARKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 241 .72 RPM | 244 .06 RPM |
SRP012922_cerebellum | 169 .91 RPM | 191 .77 RPM |
SRP012922_heart | 129 .94 RPM | 126 .46 RPM |
SRP012922_kidney | 269 .96 RPM | 294 .88 RPM |
SRP012922_liver | 125 .08 RPM | 141 .18 RPM |
SRP012922_lung | 293 .54 RPM | 394 .64 RPM |
SRP012922_quadricep_muscle | 197 .14 RPM | 184 .51 RPM |
SRP012922_spleen | 334 .57 RPM | 347 .62 RPM |