RetrogeneDB ID: | retro_cfam_328 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:98050517..98051098(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCAFG00000002237 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL19 | ||
Ensembl ID: | ENSCAFG00000016493 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L19 [Source:UniProtKB/Swiss-Prot;Acc:D0VWQ5] |
Percent Identity: | 93.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARR- |
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLII.KPVTVHS.A.C.KNTLAR.. | |
Retrocopy | MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIWKPVTVHS*AWCWKNTLARG< |
Parental | KGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEH |
KGRHMGIGKRKGTANARMPEKVTWMRR.RIL.RLLRRYRESKKID.H.YHSLYLKVKGNVFKNKRILMEH | |
Retrocopy | KGRHMGIGKRKGTANARMPEKVTWMRRTRILCRLLRRYRESKKIDHHVYHSLYLKVKGNVFKNKRILMEH |
Parental | IHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK |
IHKLKADKARKKLLADQAEARRSKTKEA.K.REE.LQAKKEEIIKTLSKEEETKK | |
Retrocopy | IHKLKADKARKKLLADQAEARRSKTKEASKHREEQLQAKKEEIIKTLSKEEETKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .25 RPM | 477 .69 RPM |
SRP017611_brain | 0 .16 RPM | 112 .50 RPM |
SRP017611_kidney | 2 .58 RPM | 996 .24 RPM |
SRP017611_liver | 0 .22 RPM | 226 .75 RPM |