RetrogeneDB ID: | retro_dnov_2198 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_55032:557..851(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ITGB1BP1 | ||
Ensembl ID: | ENSDNOG00000008930 | ||
Aliases: | None | ||
Description: | integrin beta 1 binding protein 1 [Source:HGNC Symbol;Acc:23927] |
Percent Identity: | 74.51 % |
Parental protein coverage: | 55.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | SVDSSLGGLS-RSSTVASL-DTDSTRSSGQSNNNSDTCAEFRIK-YVGAIEKLKVSEGK-SLEGPLDLIN |
SV.SSLGGL...S.TVA.L.DTDS..SSGQSN..SDTCAEF....YV.AIEKLKVSEGK.SLEG.LDLI. | |
Retrocopy | SVNSSLGGLY<QSTTVATL<DTDSSKSSGQSNSYSDTCAEFWKR>YVCAIEKLKVSEGK>SLEGLLDLIK |
Parental | YIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVS |
..DV.QQ.GKL.FV.L.EEFIMGVSKYGIKVS | |
Retrocopy | FTDVTQQVGKLSFVLLKEEFIMGVSKYGIKVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 9 .72 RPM |
SRP012922_cerebellum | 0 .00 RPM | 25 .57 RPM |
SRP012922_heart | 0 .00 RPM | 7 .89 RPM |
SRP012922_kidney | 0 .00 RPM | 11 .50 RPM |
SRP012922_liver | 0 .00 RPM | 6 .81 RPM |
SRP012922_lung | 0 .00 RPM | 20 .62 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 8 .83 RPM |
SRP012922_spleen | 0 .00 RPM | 21 .86 RPM |