RetrogeneDB ID: | retro_dnov_2218 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_56238:761..1238(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STYX | ||
Ensembl ID: | ENSDNOG00000016631 | ||
Aliases: | None | ||
Description: | serine/threonine/tyrosine interacting protein [Source:HGNC Symbol;Acc:11447] |
Percent Identity: | 74.53 % |
Parental protein coverage: | 71.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LFLGPYSSAMKSKLPILQKHGITHIICIRQ-NIEANFIKPNFQQLFRYLVLDIADNPVE-NIIRFFPMTK |
L.LG.YSSA.KSKLPILQKHGITHI.C.RQ.NIEA.FIKPNFQQLFR.LVLDIA.NPVE..II.F.PMTK | |
Retrocopy | LVLGSYSSATKSKLPILQKHGITHILCTRQ<NIEASFIKPNFQQLFR*LVLDIAGNPVE>YIICFSPMTK |
Parental | EFIDGSFQTGGKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRFCINPNAGFVHQLQEYEAI |
EF.DGS.QTGG.VLV.G..GISR...FVI.YIMET.GMKYR.A...VQERR.CI.PN.GF.HQL.EYEAI | |
Retrocopy | EFMDGSLQTGGNVLVQGKTGISRTTVFVIEYIMETAGMKYREAYVQVQERRSCISPNTGFIHQL*EYEAI |
Parental | YLAKLTIQMMSPVQIERSLSV |
YL..LT.QMM...QIERS..V | |
Retrocopy | YLEELTTQMMPQQQIERSILV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 6 .03 RPM |
SRP012922_cerebellum | 0 .27 RPM | 3 .44 RPM |
SRP012922_heart | 0 .00 RPM | 4 .64 RPM |
SRP012922_kidney | 0 .00 RPM | 4 .93 RPM |
SRP012922_liver | 0 .00 RPM | 2 .63 RPM |
SRP012922_lung | 0 .00 RPM | 4 .89 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 11 .77 RPM |
SRP012922_spleen | 0 .00 RPM | 5 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000016631 | 9 retrocopies |
retro_dnov_1713, retro_dnov_1720, retro_dnov_1914, retro_dnov_2138, retro_dnov_2186, retro_dnov_2218 , retro_dnov_2221, retro_dnov_461, retro_dnov_66,
|
Echinops telfairi | ENSETEG00000000561 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000029372 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053205 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000016123 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000007956 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014504 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012229 | 1 retrocopy |