RetrogeneDB ID: retro_dnov_295

Retrocopy location

• Organism: Armadillo (Dasypus novemcinctus)
• Coordinates: GeneScaffold_3404:20243..20816(+)
• Located in intron of: ENSDNOG00000009359

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSDNOG00000000640
• Aliases: None
• Description: None

Sequence

>retro_dnov_295
AAAAGTTCCCATCCAGCAATCCATTCTCTCTACCATGGCTCACTTTTCATGTTCTTCCAGATTAGAATTTTAGGTTTTGG
ACCAATGTATGTTATATTAGCATATACAGTGCCATCAGTTTCCTTGTTCATTGTTACATTTGAACAGATCTGCTTGGTAA
TGGAAGGCCCATTCATTTATCAGAGAGAAAGTCCCTTGGGTACTAGATTCAGCTAAGAGAAATCAAGCACTGTTCTGATA
CCCAGTCATCCAGGACTCGTACTTCTTGTTTCCACCAATGCTCATCTACCGCGACAGCTCTTCCAGGACTCTCACTGTAA
GGAGGAGTTATGTTGCTACACAATTTGCACAGATTTTTGGTTACCTTTTTTTAGGTGTACTACATCTTTGAAAGTCTCTG
TGCACCCTTGTTTCAGAATATCAAACAGGAGCCCTTCAGTGCTTGTGTTCTGGCCCTGTGTATATTTTCACTCCATCTTG
CCATGTGTGCTGGTTCTTTTCCTTTTTTTTTTCCGCCTTTTTGCACTGCTGTTCAATACCTTTCCTGAGATGTTACACCA
TGGTGACAGGATT

Alignment

ORF - retro_dnov_295 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.78 %
• Parental protein coverage: 55.36 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  KSSHPAIHSLFHGSLFLSFQIRILCFGPPYIVFAYTLPPASWFIVIYEQLRFIM-KAHSFIRENVPRVLD
          KSSHPAIHSL.HGSLF..FQIRIL.FGP.Y...AYT.P..S.FIV..EQ....M.KAHSFIRE.VP.VLD
Retrocopy KSSHPAIHSLYHGSLFMFFQIRILGFGPMYVILAYTVPSVSLFIVTFEQICLVM>KAHSFIREKVPWVLD

Parental  SIK-EKSSTVPI-PTVNQYLYFLFAPTLIYRDSYPRTPTVRWSYVATQFAQCFACIFY-VYYILERLCIP
          S.K.EKSSTV.I.P...Q..YFLF.P.LIYRDS..RT.TVR.SYVATQFAQ.F...F..VYYI.E.LC.P
Retrocopy SAK<EKSSTVLI>PVI-QDSYFLFPPMLIYRDSSSRTLTVRRSYVATQFAQIFGYLFL>VYYIFESLCAP

Parental  LFGNIKQEPFSARVLVLC-FFNSILPGTLIAFNIFFGFFHSWFNAFAEMLRFGDRM
          LF.NIKQEPFSA.VL.LC..F.SILP..L.............FN.F.EML..GDR.
Retrocopy LFQNIKQEPFSACVLALC>YFHSILPCVLVXXXXXXXXXALLFNTFPEMLHHGDRI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP012922_ascending_colon	1.75 RPM	0.00 RPM
SRP012922_cerebellum	1.24 RPM	0.14 RPM
SRP012922_heart	0.00 RPM	0.00 RPM
SRP012922_kidney	0.55 RPM	4.38 RPM
SRP012922_liver	4.02 RPM	132.51 RPM
SRP012922_lung	1.53 RPM	0.76 RPM
SRP012922_quadricep_muscle	0.17 RPM	0.00 RPM
SRP012922_spleen	1.03 RPM	0.00 RPM

ChIP-Seq

Dasypus novemcinctus was not studied using ChIP-Seq data.

EST

Dasypus novemcinctus was not studied using EST data.

TSS

Dasypus novemcinctus was not studied using FANTOM5 data.

Lab

retro_dnov_295 was not experimentally validated.

Homology

Retrocopy orthology:

Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000640	1 retrocopy	retro_dnov_295 ,
Myotis lucifugus	ENSMLUG00000016095	1 retrocopy	retro_mluc_206,