RetrogeneDB ID: retro_mluc_206

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02066599:5411..7058(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000016493
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000016095
• Aliases: None
• Description: O-acyltransferase [Source:UniProtKB/TrEMBL;Acc:G1PTU5]

Sequence

>retro_mluc_206
ATGGTGGGCGAAGAGATGTCTCTAAGAAAACGGCTGTCAAAGTCCAGTGACGATCCTGAAGAAAAGGAAGACCAGGGCAA
CCCTGCAAAGCAGGCCCCAGAGACACCTAGTAATGGCCGGGTTGACATAAAAGAGTTAATTGCAAAGAAGAAACAGTTGA
CAGCAGAGGCAGAGGAATTGAAGCCATATTTTATGAAGGAAGTTGGCACTCACTTTGATGATTTTGTGACCAATCTCATT
GAAAAGTCAGTCTCATTAGATAGTGGTGGGTGTGCGCTCACATCCTTTTCTGTTCTTGGAGGAGTGAACAACCATAGAGC
TAAAGATCTGAGAGCACCTCCAGAACATGGAAAGATTTTTGTTATAAGGCGATCTCTCTTAGATGAGCTGTTCGAGGTGG
ACCACATCAGAACAATATATCACATGTTTATTGCCCTCCTCATCCTCTTTATCCTCAGCACACTTGTGGTAGATTACATT
GACGAAGGAAGGCTGGTGCTTGAGTTCAATCTCATATATTATGCTTTTGGCCAGCTTCCTGTTGTTATATGTACATGGTG
CGCCATGTTCTTGAGTACACTTTCAGTTCCCTACTTCCTCTTTCAACATTGGGCCAGAGGCTACAGCAAGAGTTCTCATC
CAGTGATCCATTCTTTCTTCCATGGCTTGCTTCTCATGGTCTTCCAGATTGGAATTCTAGGTTGTGGACCAACATATGCT
GTATTAGCATATACACTGCCACCAGCTTCTCGGTGCATTGTTATCTTTGAACAGATTCGTATGATAATGAAGGTCCATTC
ATTTGTCAGAGAGAATGTGCCTCGGGTATTGACTTCAGCTAAGGAGAAATCAAGAACTGTCCCAGTACCCACAGTCAACC
AGTACTTGTATTTCTTGTTCGCGCCAACCCTCATCTACCGGGACAACTACCCCAGGACTCCCACTGTAAGGTGGGGTTAT
GTGGCTATGCAGTTTGCACAGGTGTTTGGCTGCTTATTTTATATGTACTACGTCTTTGAAAGGCTCTGTGCCCCCTTGTT
TCGGAATATCAAGCAGGAGCCCTTCAGTGCTCGTGTTCTGGTCCTATGTGTATTTAACTCCATCTTGCCAGGTGTGCTGG
GGCTGTTACTTACTTTTTTTGCCTTTTTGCACTGTTGGCTCAATGCCTTTGCCGAGATGTTACGCTTTGGTGACAGAATG
TTTTATAAGGATTGGTGGAATTCCACATCCTACTCCAACTATTACAGGACCTGGAATGTGGTGGTCCATGACTGGCTGTA
TTACTATGCTTACAAGGACTTTCTCTGGTTTTTCACTAAGAGATTCAAGTCTGCTGCCATGTTAGCCGTCTTTGCTGTGT
CTGCTGTCGTGCACGAATACGCCTTAGCTGTTTGCTTGAGCTTTTTCTACCCAGTGCTCTTCGTGCTTTTCATGTTCTTT
GGAATGGCTTTCAACTTCATTGTCAATGACAGCCGGAAAAGGCCGATTTGGAACGTCATGATGTGGACTTCACTTTTTGC
GGGCCAGGGAGTCCTCCTGTGCTTTTATTCCCAAGAGTGGTATGCACGTCAGCACTGTCCTCTGAAAAATCCCACATTTC
TGGATTACATCCGGCCACGTTCCTGGACTTGCCGCTACGTGTTTTAG

Alignment

ORF - retro_mluc_206 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.09 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MVGEEMSLRKRLSKSSDDPEEKEDQGNPAKQAHQFPPLGRVDIKELIAKKKQLTAEAEELKPYFMKEVGT
          MVGEEMSLRKRLSKSSDDPEEKEDQGNPAKQA...P..GRVDIKELIAKKKQLTAEAEELKPYFMKEVGT
Retrocopy MVGEEMSLRKRLSKSSDDPEEKEDQGNPAKQAPETPSNGRVDIKELIAKKKQLTAEAEELKPYFMKEVGT

Parental  HFDDFVTNLIEKSVSLDSGGCALTSFSVLGGVNNHRAKDLRAPPEHGKIFVIRRSLLDELFEVDHIRTIY
          HFDDFVTNLIEKSVSLDSGGCALTSFSVLGGVNNHRAKDLRAPPEHGKIFVIRRSLLDELFEVDHIRTIY
Retrocopy HFDDFVTNLIEKSVSLDSGGCALTSFSVLGGVNNHRAKDLRAPPEHGKIFVIRRSLLDELFEVDHIRTIY

Parental  HMFIALLILFILSTLVVDYIDEGRLVLEFNLIYYAFGQLPVVICTWCAMFLSTLSVPYFLFQHWARGYSK
          HMFIALLILFILSTLVVDYIDEGRLVLEFNLIYYAFGQLPVVICTWCAMFLSTLSVPYFLFQHWARGYSK
Retrocopy HMFIALLILFILSTLVVDYIDEGRLVLEFNLIYYAFGQLPVVICTWCAMFLSTLSVPYFLFQHWARGYSK

Parental  SSHPVIHSFFHGLLLMVFQIGILGCGPTYAVLAYTLPPASRCIVIFEQIRMIMKVHSFVRENVPRVLTSA
          SSHPVIHSFFHGLLLMVFQIGILGCGPTYAVLAYTLPPASRCIVIFEQIRMIMKVHSFVRENVPRVLTSA
Retrocopy SSHPVIHSFFHGLLLMVFQIGILGCGPTYAVLAYTLPPASRCIVIFEQIRMIMKVHSFVRENVPRVLTSA

Parental  KEKSRTVPVPTVNQYLYFLFAPTLIYRDNYPRTPTVRWGYVAMQFAQVFGCLFYMYYVFERLCAPLFRNI
          KEKSRTVPVPTVNQYLYFLFAPTLIYRDNYPRTPTVRWGYVAMQFAQVFGCLFYMYYVFERLCAPLFRNI
Retrocopy KEKSRTVPVPTVNQYLYFLFAPTLIYRDNYPRTPTVRWGYVAMQFAQVFGCLFYMYYVFERLCAPLFRNI

Parental  KQEPFSARVLVLCVFNSILPGVLGLLLTFFAFLHCWLNAFAEMLRFGDRMFYKDWWNSTSYSNYYRTWNV
          KQEPFSARVLVLCVFNSILPGVLGLLLTFFAFLHCWLNAFAEMLRFGDRMFYKDWWNSTSYSNYYRTWNV
Retrocopy KQEPFSARVLVLCVFNSILPGVLGLLLTFFAFLHCWLNAFAEMLRFGDRMFYKDWWNSTSYSNYYRTWNV

Parental  VVHDWLYYYAYKDFLWFFTKRFKSAAMLAVFAVSAVVHEYALAVCLSFFYPVLFVLFMFFGMAFNFIVND
          VVHDWLYYYAYKDFLWFFTKRFKSAAMLAVFAVSAVVHEYALAVCLSFFYPVLFVLFMFFGMAFNFIVND
Retrocopy VVHDWLYYYAYKDFLWFFTKRFKSAAMLAVFAVSAVVHEYALAVCLSFFYPVLFVLFMFFGMAFNFIVND

Parental  SRKRPIWNVMMWTSLFAGQGVLLCFYSQEWYARQHCPLKNPTFLDYIRPRSWTCRYVF
          SRKRPIWNVMMWTSLFAGQGVLLCFYSQEWYARQHCPLKNPTFLDYIRPRSWTCRYVF
Retrocopy SRKRPIWNVMMWTSLFAGQGVLLCFYSQEWYARQHCPLKNPTFLDYIRPRSWTCRYVF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_206 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000640	1 retrocopy	retro_dnov_295,
Myotis lucifugus	ENSMLUG00000016095	1 retrocopy	retro_mluc_206 ,