>retro_dnov_352
ATGGAGAACCAGGTGCTGACACCACATGTATACTGGGCTCAGTGATACTGCAAGTTGTATCTGTGCGTGGAGCTGAGCGA
CATTCAGAATCCTGCTGTCAGCATCACTGAAAATGTTCTACATTTTAAAGCTCAGGGACATAGTGCCAAAGGAGACAACA
TCTACATATTTCACCTGGAGTTCGTTGAACTTGTGAAGCCAGAGCTGGTTTACAAACTGACCCAGAGGCAGGTAAACATT
ACAGTACAGAAGGTGAGTCAGTGGTGGAACGACTCACCAAGCAGGAGAAATGTCCACTGTTTTTGGCCCCTGATTTGATC
ACTGGCTAGACAAGCCTAATACGGAAATGGAGCTCAGAGCCAAGGAACAAGAATGCCTAAATAAACTCAGACTTGAAAGT
GAGCCTCCCCTGAAACTCTTGCAAGCTTGAAGAAAGGACACCTGCTCATGGATAATTTTGTAAAGTTCTTGGGATTCTCC
TGGATCCTTGTTAACTTGACTGTGCCATTCTTTATCTTGGGAAAAGCATCCTTCTATGACATATTTCACACCCTGGCTGA
CAGTTGTATTTCTGCCAGATGCTGGCAGCCATGGAAACTGTCAATACAGCAATTAGAATCACTAACTCACCAGTATTGCC
TTCTCTTATCCAACTTCTTGGAAGAAATTTCTTTCTGTTTATAATCTTAGGCACCATGGAAAAAATGTGAAACAGTATTG
TGGTTTTCTTTGTGTTTTATCTGTGGAGCACTATTAAATTTTCAGGTACCCCGTTTACATGCTTTCCTGCCTTTGATATG
GATTGGAAAGTGCCCACAGGCTTCCCTACCGCGTGCGTATTCCCATATACCCTGTAGGCTGTTCAGCTCAAGCTGTTTCA
GTGATCCAGTCCATT
ORF - retro_dnov_352 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.9 % |
Parental protein coverage: |
83.15 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | MENQVLTPHVYWAQRHRELYLRVELSDVQNPAISITENVLHFKAQGHGAKGDNVYEFHLEFFDLVKPELV |
| MENQVLTPHVYWAQ....LYL.VELSD.QNPA.SITENVLHFKAQGH.AKGDN.Y.FHLEF..LVKPELV |
Retrocopy | MENQVLTPHVYWAQ*YCKLYLCVELSDIQNPAVSITENVLHFKAQGHSAKGDNIYIFHLEFVELVKPELV |
|
Parental | YKLTQRQVNITVQKKVSQWW-ERLTKQEKRPLFLAPD-FDRWLDESDAEMELRAKEEERLNKLRLESE-G |
| YKLTQRQVNITVQK.VSQWW.ERLTKQEK.PLFLAPD.FD.WLD....EMELRAKE.E.LNKLRLESE.. |
Retrocopy | YKLTQRQVNITVQK-VSQWW<ERLTKQEKCPLFLAPD<FDHWLDKPNTEMELRAKEQECLNKLRLESE<A |
|
Parental | SPETLASLKKGYLFMYNFVQFLGFSWIFVNLTVRFFILGKESFYDTFHTLAD-MMYFCQMLAAVETINAA |
| SPETLASLKKG.L.M.NFV.FLGFSWI.VNLTV.FFILGK.SFYD.FHTLAD...YFCQMLAA.ET.N.A |
Retrocopy | SPETLASLKKGHLLMDNFVKFLGFSWILVNLTVPFFILGKASFYDIFHTLAD<QLYFCQMLAAMETVNTA |
|
Parental | IGVTNSPLLPSLIQLLGRNFILFIIFGTMEEMQNSAMVFFVFYLWSAIE-IFRYPFYMLSCI-DMDWKVL |
| I..TNSP.LPSLIQLLGRNF.LFII.GTME.M.NS..VFFVFYLWS.I..IFRYP.YMLSC..DMDWKV. |
Retrocopy | IRITNSPVLPSLIQLLGRNFFLFIILGTMEKM*NSIVVFFVFYLWSTIK<IFRYPVYMLSCL>DMDWKVP |
|
Parental | TW-LRYTVWIPLYPLGCLSEAVSVIQSI |
| T..L.Y.V.IP.YP.GC...AVSVIQSI |
Retrocopy | TG<LPYRVRIPIYPVGCSAQAVSVIQSI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
44 .73 RPM |
SRP012922_cerebellum |
0 .14 RPM |
57 .60 RPM |
SRP012922_heart |
0 .23 RPM |
13 .69 RPM |
SRP012922_kidney |
0 .27 RPM |
62 .15 RPM |
SRP012922_liver |
0 .00 RPM |
177 .56 RPM |
SRP012922_lung |
0 .00 RPM |
28 .56 RPM |
SRP012922_quadricep_muscle |
0 .35 RPM |
10 .04 RPM |
SRP012922_spleen |
0 .00 RPM |
48 .30 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_352 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.