RetrogeneDB ID: | retro_dnov_498 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_535:163925..164331(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS6 | ||
Ensembl ID: | ENSDNOG00000025622 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S6 [Source:HGNC Symbol;Acc:14051] |
Percent Identity: | 65. % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PRPPCPASLALAVCPGMPRYE-LALILKAMQRPETAAALKRTIEALMDRGAIVRNLENLGERALPYKISS |
P...CP.SL....C..M..Y..L.LILK..Q.PET.AALK..IE.LMD.GA.VRNLEN..E.ALPYKI.S | |
Retrocopy | PLSLCPGSLCV-MCSSMSSYD<LTLILKVIQWPETTAALK*MIETLMDKGAMVRNLENSEEQALPYKIFS |
Parental | HNQR-HSRGGYFLVDFYAPTTVVESMLDHLSRDTDVIRPNIVKHPLTKEVRECEGMVPVPLEEKLYYTKK |
H....H..GGYF.V.F.APTT..ES..DHLS.DTDVI.PNIV.H.LTKEVRE....VPVPLEEKLYYTKK | |
Retrocopy | HSPG<HGKGGYFMVNFCAPTTT-ESRMDHLSPDTDVIQPNIVMHLLTKEVREYKRFVPVPLEEKLYYTKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 13 .03 RPM |
SRP012922_cerebellum | 0 .27 RPM | 27 .22 RPM |
SRP012922_heart | 0 .00 RPM | 16 .24 RPM |
SRP012922_kidney | 0 .00 RPM | 33 .13 RPM |
SRP012922_liver | 0 .46 RPM | 3 .41 RPM |
SRP012922_lung | 0 .00 RPM | 17 .87 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 16 .96 RPM |
SRP012922_spleen | 0 .23 RPM | 12 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000025622 | 1 retrocopy |
retro_dnov_498 ,
|
Homo sapiens | ENSG00000243927 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004239 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000013877 | 1 retrocopy |