RetrogeneDB ID: retro_nleu_896

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397275.1:33194928..33195171(-)
• Located in intron of: ENSNLEG00000016263

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPS6
• Ensembl ID: ENSNLEG00000004239
• Aliases: None
• Description: None

Sequence

>retro_nleu_896
CCCCGCTATGAGCTGGCTTTAATCCTGAAAGGCATGCCGCGGCCACAGACTGCTGCTGCTTTGAAACATACGATAGAGGT
TCTGATGGAAAAAGGAGCAATAGTGAGGAACTTGGAAAACCTGGGTGAGCGAGCGCTTCCTTGTAAGATCTCCACCCACA
ATCAGTGGCACAACAGAGGCGGGTATTTCCTGGTGGATTTTTATGCACCAACCACAACTGTTGAAAGCATGATGGAGCAC
TTG

Alignment

ORF - retro_nleu_896 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.25 %
• Parental protein coverage: 65.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PRY-LALILKAMQRPETAATLKRTIEALMDRGAIVRDLENLGERALPYRISAHSQQHNRGGYFLVDFYAP
          PRY.LALILK.M.RP.TAA.LK.TIE.LM..GAIVR.LENLGERALP..IS.H.Q.HNRGGYFLVDFYAP
Retrocopy PRYELALILKGMPRPQTAAALKHTIEVLMEKGAIVRNLENLGERALPCKISTHNQWHNRGGYFLVDFYAP

Parental  TTTVESMVEHL
          TTTVESM.EHL
Retrocopy TTTVESMMEHL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_896 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000025622	1 retrocopy	retro_dnov_498,
Homo sapiens	ENSG00000243927	1 retrocopy	retro_hsap_149,
Nomascus leucogenys	ENSNLEG00000004239	1 retrocopy	retro_nleu_896 ,
Pan troglodytes	ENSPTRG00000013877	1 retrocopy	retro_ptro_145,