>retro_dnov_622
GATCGTGAATTAATTGACCCATTTCCAATACCTCTGGTTATAATTGGAAGTAAATACGATATTTTTCAGGATTTTGACTC
TGAGAAGAGAAAGATAATATGCAAGACACTTCGATTTGTCGCACATTACTATGGAGCATCATTAATGTTTACCAGTAAAT
CAGAAGCTCTATTACTAAAAATACGTGGAATTATCAACCAGTTGGCATTTGGCATTGACAAAAGCAAATCAATATGTGTG
GGATCAGAACAAACCACTGTTTATCACAGCAGGATTGGATTCTTTAAGTCAAATAGGATCTCCTCCTGTTCCCGATAATG
ACATTGGAAAACTTCATGCACATTCACCAATGGAGCTGTGGAAAAAGGTGTATGAAAAGCTCTTTCCACCAAAGAGTATC
AACAAGTTGAAAGATGCCAGGGACCCTGCACGAGACCCTCAATATGCTGAAAGTGAAGTGGATGAAATGAGAATTCAAAA
GATCAGGAACTTGAACAGTACAAAAGAAGTTCTTCCAAGTCCTGGAAACAAATTGACTTTGAGTCT
ORF - retro_dnov_622 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.28 % |
Parental protein coverage: |
51.85 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | DRELIDPFPIPLVIIGSKYDIFQDFDSEKRKIICKTLRFVAHYYEASLMFTSKSEAVLLKIRGIINQLAF |
| DRELIDPFPIPLVIIGSKYDIFQDFDSEKRKIICKTLRFVAHYY.ASLMFTSKSEA.LLKIRGIINQLAF |
Retrocopy | DRELIDPFPIPLVIIGSKYDIFQDFDSEKRKIICKTLRFVAHYYGASLMFTSKSEALLLKIRGIINQLAF |
|
Parental | GIDKSKSICV-DQNKPLFITAGLDSLSQIGSPPVPDNDIGKLHAHSPMELWKKVYERLFPPKSINKLKDA |
| GIDKSKSICV.DQNKPLFITAGLDSLSQIGSPPVPDNDIGKLHAHSPMELWKKVYE.LFPPKSINKLKDA |
Retrocopy | GIDKSKSICV>DQNKPLFITAGLDSLSQIGSPPVPDNDIGKLHAHSPMELWKKVYEKLFPPKSINKLKDA |
|
Parental | RDPARDPQYAESEVDEMRIQ-KDQELEQYKRSSSKSWKQIDFES |
| RDPARDPQYAESEVDEMRIQ.KDQELEQYKRSSSKSWKQIDFES |
Retrocopy | RDPARDPQYAESEVDEMRIQ<KDQELEQYKRSSSKSWKQIDFES |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .58 RPM |
1 .94 RPM |
SRP012922_cerebellum |
1 .37 RPM |
1 .79 RPM |
SRP012922_heart |
0 .23 RPM |
0 .70 RPM |
SRP012922_kidney |
1 .37 RPM |
6 .84 RPM |
SRP012922_liver |
1 .86 RPM |
3 .41 RPM |
SRP012922_lung |
5 .19 RPM |
12 .98 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
0 .69 RPM |
SRP012922_spleen |
2 .75 RPM |
4 .92 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_622 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.