RetrogeneDB ID: retro_mputfur_142

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:24059973..24061029(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020110
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000011728
• Aliases: None
• Description: None

Sequence

>retro_mputfur_142
ATGCCCAGTGAAACTCTCTGGGAAATTGCAAAAGCCGAAGTGGAAAAACATGGAAGTAGTGGAGGTGAAGGTGATGGGCT
TGAAATTGGAGAAAAATCTGTTTTCTTCATTGGCAGTAAAAATGGGGGAATGACTACTATTATTCTAAGGTGTCTTGACA
GGGATGAGCCACCAAAACCAACATTAGCTTTGGAATATACATATGGAAGAAGAGCAAAAGGGCATAATATACCAAAAGAT
ATTGCTCACTTCTGGGAACTAGGTGGAGGAACGTCTTTATTGGACTTAATCAGCATCCCCATCACAAGTGATACCTCACG
GACATTTTCTCTTGTTCTTGTTTTGGATCTTTCGAAACCTAATGACCTTTGGCCCACCATGGAAAATCTGTTGCAAGCCA
CAAAAAGCCATGTGGATAAAATGATAATGAAACTGGGCAAGACCAATTCTAAAGCAGCTTCTGAAATGAGACAGAAGATA
TGGAGTAATATGCAGAAGGACCATCCAGATCATGAATTAATCGACCCATTTCTAAAACCTCTGGTCATAATTGGAAGTAA
ATACGATATTTTTCAGGATTTTGACTCTGAGAAGAGGAAGGTTATATGCAAGACCCTTCGATTTGTTGCACATTATTATG
GAGCATCGTTAATGTTTACCAGTAAATCAGAAGCTCTATTACTAAAAATACGTGGAGTTATCAACCAGTTAGCATTTGGC
ATTGACAAAAGCAAATCAATATGTGTGGATCAGAATAAACCACTGTTTATCACAGCAGGATTGGATTCTTTAAGTCAAAT
AGGATCTCCTCCTGTTCCTGATAATGATATTGGAAAACTTCATGCCCATTCACCAATGGAGTTGTGGAAGAAAGTGTATG
AAAGGGTCTTTCCACCAAAGAGTATCAACACACTAAAAGATATCAAGGACCCTGCAAGAGACCCTCAGTATGCTGAAAGT
GAAGTTGATGAAATGAGAATTCAGAAGGATCAGGAACTGGAACAATACAAAAGAAGTTCTTCCAAGTCTCGGAAACAAAT
TGAGCTTGATTCTTGA

Alignment

ORF - retro_mputfur_142 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.29 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPSETLWEIAKAEVEKHGSSGGEGDGLEIGEKSVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGR
          MPSETLWEIAKAEVEKHGSSGGEGDGLEIGEKSVFFIGSKNGG.TTIILRCLDRDEPPKPTLALEYTYGR
Retrocopy MPSETLWEIAKAEVEKHGSSGGEGDGLEIGEKSVFFIGSKNGGMTTIILRCLDRDEPPKPTLALEYTYGR

Parental  RAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTLRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDK
          RAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDT.RTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDK
Retrocopy RAKGHNIPKDIAHFWELGGGTSLLDLISIPITSDTSRTFSLVLVLDLSKPNDLWPTMENLLQATKSHVDK

Parental  MIMKLGKTNSKAASEMRQKIWSNMQKDHPDRELIDPFLIPLVIIGSKYDIFQDFDSEKRKVICKTLRFVA
          MIMKLGKTNSKAASEMRQKIWSNMQKDHPD.ELIDPFL.PLVIIGSKYDIFQDFDSEKRKVICKTLRFVA
Retrocopy MIMKLGKTNSKAASEMRQKIWSNMQKDHPDHELIDPFLKPLVIIGSKYDIFQDFDSEKRKVICKTLRFVA

Parental  HYYGASLMFTSKSEALLLKIRGVINQLAFGINKSKSICVDQNKPLFITAGLDSLSQIGSPPVPDNDIGKL
          HYYGASLMFTSKSEALLLKIRGVINQLAFGI.KSKSICVDQNKPLFITAGLDSLSQIGSPPVPDNDIGKL
Retrocopy HYYGASLMFTSKSEALLLKIRGVINQLAFGIDKSKSICVDQNKPLFITAGLDSLSQIGSPPVPDNDIGKL

Parental  HAHSPMELWKKVYERVFPPKSINTLKDIKDPARDPQYAESEVDEMRIQKDQELEQYKRSSSKSWKQIELD
          HAHSPMELWKKVYERVFPPKSINTLKDIKDPARDPQYAESEVDEMRIQKDQELEQYKRSSSKS.KQIELD
Retrocopy HAHSPMELWKKVYERVFPPKSINTLKDIKDPARDPQYAESEVDEMRIQKDQELEQYKRSSSKSRKQIELD

Parental  S
          S
Retrocopy S

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_142 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_142 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000012538	1 retrocopy	retro_dnov_622,
Mustela putorius furo	ENSMPUG00000011728	1 retrocopy	retro_mputfur_142 ,