RetrogeneDB ID: | retro_dnov_649 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_7245:45558..46032(-) | ||
Located in intron of: | ENSDNOG00000008955 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MLF2 | ||
Ensembl ID: | ENSDNOG00000000758 | ||
Aliases: | None | ||
Description: | myeloid leukemia factor 2 [Source:HGNC Symbol;Acc:7126] |
Percent Identity: | 86.08 % |
Parental protein coverage: | 80.83 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PASRRMQAGAVSPFGMLGMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQE |
PASRRMQAGAVSPFGMLGMSGGFM.................AGGNCQTFSSSTVISYSNTGDGAPKVYQE | |
Retrocopy | PASRRMQAGAVSPFGMLGMSGGFMXXXXXXXXXXXXXXXXXAGGNCQTFSSSTVISYSNTGDGAPKVYQE |
Parental | TSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDE--AAAFD |
TSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDE..AAAFD | |
Retrocopy | TSEMRSAPGGIRETRRTVRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFD |
Parental | DEWQRETSRFRQQRPLEF |
DEW.RETS.F.QQRPLEF | |
Retrocopy | DEWRRETSQFQQQRPLEF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 19 .84 RPM | 29 .56 RPM |
SRP012922_cerebellum | 59 .11 RPM | 104 .34 RPM |
SRP012922_heart | 10 .67 RPM | 17 .63 RPM |
SRP012922_kidney | 29 .30 RPM | 56 .68 RPM |
SRP012922_liver | 16 .56 RPM | 27 .71 RPM |
SRP012922_lung | 13 .90 RPM | 27 .34 RPM |
SRP012922_quadricep_muscle | 9 .17 RPM | 13 .33 RPM |
SRP012922_spleen | 17 .74 RPM | 30 .90 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000758 | 2 retrocopies |
retro_dnov_1602, retro_dnov_649 ,
|
Echinops telfairi | ENSETEG00000014471 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000010652 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018113 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030120 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005976 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001026 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009908 | 1 retrocopy |