RetrogeneDB ID: | retro_itri_1707 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393647.1:39290..40030(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MLF2 | ||
Ensembl ID: | ENSSTOG00000009908 | ||
Aliases: | None | ||
Description: | myeloid leukemia factor 2 [Source:HGNC Symbol;Acc:7126] |
Percent Identity: | 94.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQAGAVSPFGMLG |
MF.FMRDVEPEDPMFL.DPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQ.GAV.PFGMLG | |
Retrocopy | MFCFMRDVEPEDPMFLIDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQPGAVYPFGMLG |
Parental | MSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRTV |
MSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIR..RRTV | |
Retrocopy | MSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRQIRRTV |
Parental | RDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLEF |
RDSDSGLEQMSIGHHI.DRAHILQ.SRNHRTGDQEE.QDYINLDESEAAAF.DEWRRETSRFRQQRPLEF | |
Retrocopy | RDSDSGLEQMSIGHHI*DRAHILQPSRNHRTGDQEEQQDYINLDESEAAAFGDEWRRETSRFRQQRPLEF |
Parental | RRHEASVSGGRRTEGPPRLAIQ-GPEDSPSRQSRRYDW |
RRHEA.VSGGRR.EGPPRLAIQ.G.EDSPSRQSRRYDW | |
Retrocopy | RRHEAFVSGGRRAEGPPRLAIQ<GTEDSPSRQSRRYDW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000000758 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000014471 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000010652 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018113 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030120 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005976 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000001026 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009908 | 1 retrocopy |
retro_itri_1707 ,
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