RetrogeneDB ID: | retro_dnov_728 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_102274:2529..2883(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CYB5B | ||
Ensembl ID: | ENSDNOG00000008313 | ||
Aliases: | None | ||
Description: | cytochrome b5 type B (outer mitochondrial membrane) [Source:HGNC Symbol;Acc:24374] |
Percent Identity: | 61.86 % |
Parental protein coverage: | 80.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VASSSSKELWLVIHGQIYDVSSFLNEXXXXXEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDVHPS |
V...S.K.LWLVIHG..YDVS.FL.E.....EVLLEQ.G..ASESFED.GHS.DA.EML.Q.YIG..HP. | |
Retrocopy | VKHNSLKKLWLVIHGGVYDVSGFLAEHPGGEEVLLEQDGTNASESFEDIGHSFDATEMLEQHYIGYFHPN |
Parental | DIKTESGSKXXXXXXXXXXCWSYWVFPIIGAILLGFLYRYYTSESRFS |
DIKTE..SK..........CWS.WVFPI.GAILLG.L..Y.TS.SR.S | |
Retrocopy | DIKTENDSKHLSKHNTCKSCWSNWVFPIVGAILLGCLFLYCTSQSRSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 16 .53 RPM |
SRP012922_cerebellum | 0 .00 RPM | 6 .46 RPM |
SRP012922_heart | 0 .00 RPM | 7 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 16 .43 RPM |
SRP012922_liver | 0 .00 RPM | 2 .48 RPM |
SRP012922_lung | 0 .00 RPM | 8 .71 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 3 .98 RPM |
SRP012922_spleen | 0 .00 RPM | 10 .42 RPM |