RetrogeneDB ID: | retro_dnov_786 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_107173:2872..3524(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LYPLAL1 | ||
Ensembl ID: | ENSDNOG00000001461 | ||
Aliases: | None | ||
Description: | lysophospholipase-like 1 [Source:HGNC Symbol;Acc:20440] |
Percent Identity: | 81.65 % |
Parental protein coverage: | 91.85 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | HSASVIYLHGSGDTGQGLRKWIKQVSHQDLAFQHIKIIYPTAPSRPYTPMKGAMSNVWFDRFKISDDCPE |
H.......H..GDTGQGLRKWIKQVSHQDL.FQHIKIIYPT.PSRP.TPMKGAMSNVWFDRFKISDDCPE | |
Retrocopy | HLPAWLRAH**GDTGQGLRKWIKQVSHQDLTFQHIKIIYPTPPSRPSTPMKGAMSNVWFDRFKISDDCPE |
Parental | HLESIDEMCQVL-TDLINDELKSGIKKNRILIEGLSMGGCRAMHLAYRHQQDVAGVFTLSSFPNKTSVVY |
H.ESIDEMCQVL.TDLINDE.KSGIK.N.ILI.G.SMGGC.AMHLAYR..QDVAGVF.LSSF.NKTS.VY | |
Retrocopy | HHESIDEMCQVL>TDLINDEVKSGIKNNGILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKTSTVY |
Parental | PALQKTDGILP-LFQCHGTTDELVLHSWGEETNLMLKSLGMGTKFYSFPDVDAEISET--EKLKSWILKK |
PALQKTDG.LP.LFQCHGT.DELVLHSWGEETNL.LKSLG..T.FYSFPDV..E.S.T..EKLK.WILKK | |
Retrocopy | PALQKTDGTLPELFQCHGTADELVLHSWGEETNLKLKSLGVST*FYSFPDVYHELSKTELEKLKLWILKK |
Parental | LPTEMERQ |
LP.EMERQ | |
Retrocopy | LPGEMERQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 3 .50 RPM | 2 .53 RPM |
SRP012922_cerebellum | 9 .21 RPM | 3 .85 RPM |
SRP012922_heart | 7 .19 RPM | 3 .25 RPM |
SRP012922_kidney | 5 .20 RPM | 5 .48 RPM |
SRP012922_liver | 2 .79 RPM | 2 .94 RPM |
SRP012922_lung | 7 .33 RPM | 5 .96 RPM |
SRP012922_quadricep_muscle | 3 .46 RPM | 0 .35 RPM |
SRP012922_spleen | 4 .12 RPM | 4 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002210 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001461 | 1 retrocopy |
retro_dnov_786 ,
|
Dasypus novemcinctus | ENSDNOG00000011285 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000004004 | 1 retrocopy |