>retro_dnov_851
AATTATTCCTTCAGAGCTGACCTGACCAAGCTCCAGCATAGGTACCAGCTACCACAGCATTCTTGTCCACCCAGATTTCT
CGAGCCATAGGTCTGAGAGAGAAAAGGACTCCAAAGGGAAGGCTTCACTCTGGTTAATGATGCCTAAAAGACCCTTCTAG
TCCCCATCCCCCTGAGAAGGGGAATATATCTTGTAAGCTTCATGAATAGAGAATAGAGATTTGTGAATGGAGATATTATG
AAATGGAATGCAAATTTCTCATAGGGATAATGGGAACTGATGAATAACTTGCAGAAGCTCAAAGTGAAAACTGCCAAAAA
GAGATTGAACACATTGTC
ORF - retro_dnov_851 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.48 % |
Parental protein coverage: |
69.87 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | NCSFIVDTAKLQHRYQKLQR-LVHPDFFSQRSQTEKDFSEKHS-RLVNDAYKTLLAP--LSRGLYLL-KL |
| N.SF..D..KLQHRYQ..Q..LVHPDF.S.RS..EKD...K.S..LVNDA.KTLL.P..L.RG.YL..KL |
Retrocopy | NYSFRADLTKLQHRYQLPQH>LVHPDFSSHRSEREKDSKGKAS<TLVNDA*KTLLVPIPLRRGIYLV<KL |
|
Parental | HG--IEIHEGTDYEMDREFLMEIMEINEKLAEAQSEAATKEIESIV |
| H...IEI.E...YEM...FL..IM...E.LAEAQSE...KEIE.IV |
Retrocopy | HE*RIEICEWRYYEMECKFLIGIMGTDE*LAEAQSENCQKEIEHIV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012922_ascending_colon |
0 .00 RPM |
6 .81 RPM |
SRP012922_cerebellum |
0 .00 RPM |
3 .02 RPM |
SRP012922_heart |
0 .00 RPM |
3 .71 RPM |
SRP012922_kidney |
0 .00 RPM |
12 .32 RPM |
SRP012922_liver |
0 .00 RPM |
7 .43 RPM |
SRP012922_lung |
0 .00 RPM |
5 .35 RPM |
SRP012922_quadricep_muscle |
0 .00 RPM |
4 .67 RPM |
SRP012922_spleen |
0 .00 RPM |
5 .95 RPM |
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_851 was not experimentally validated.
Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
3 retrocopies.