RetrogeneDB ID: | retro_itri_797 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393324.1:7762048..7762459(-) | ||
Located in intron of: | ENSSTOG00000009251 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSCB | ||
Ensembl ID: | ENSSTOG00000011587 | ||
Aliases: | None | ||
Description: | HscB iron-sulfur cluster co-chaperone homolog (E. coli) [Source:HGNC Symbol;Acc:28913] |
Percent Identity: | 84.89 % |
Parental protein coverage: | 59.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MWGGRAQVLCRLWGLRPAGVPGRRVLSCHAASEEGSGSARCWNCGSPGRGEGFFCHQCRALQPPDPTRDY |
.WGGRAQV...LWGL.P.GVP.R.VLSCHAASEEGSG.ARCWNCGS..RG..FFCHQCRALQPPD.T..Y | |
Retrocopy | LWGGRAQVMFQLWGLQPSGVPRRSVLSCHAASEEGSG*ARCWNCGSLRRGNVFFCHQCRALQPPDRTH-Y |
Parental | FSLMDCNRSFRVNTTKLQHRFQQLQRLVHPDFFNQRSQTEKDFSEKHSTLVNEAYKTLLAPLSRGLYLL |
FSLMDCNRSFRVNTTKLQHRFQQLQRLVHP.FF.QRSQTEKDFSEKHSTLVN.AYKTLLA.LSRGLYL. | |
Retrocopy | FSLMDCNRSFRVNTTKLQHRFQQLQRLVHPGFFSQRSQTEKDFSEKHSTLVNDAYKTLLA-LSRGLYLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000011178 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011587 | 1 retrocopy |
retro_itri_797 ,
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