RetrogeneDB ID: | retro_dord_150 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_3929:51051..51371(-) | ||
Located in intron of: | ENSDORG00000010409 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000003705 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.64 % |
Parental protein coverage: | 64.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVNPTVFFDIAADGKPLGRVCFELFADK-VPKTAENFRALSTGEKGFG-YKGSCFHRIIPGFMCQGGDFT |
.V.PTVFF..A.DGKPLG.V...LFA.K.VPKTAEN..ALSTGEKGF..YKGSC...IIPGFMCQ.GDFT | |
Retrocopy | IVSPTVFFHMASDGKPLGYVS*ALFANK>VPKTAENVYALSTGEKGFV<YKGSCCRQIIPGFMCQDGDFT |
Parental | CH-NGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNT |
CH..GTG.K.IY..KFE.EN.ILKHTGPGILSMAN.GPN. | |
Retrocopy | CH<YGTGSKAIYRDKFEHENSILKHTGPGILSMANTGPNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000011597 | 12 retrocopies | |
Dipodomys ordii | ENSDORG00000003705 | 12 retrocopies | |
Monodelphis domestica | ENSMODG00000016089 | 9 retrocopies | |
Sorex araneus | ENSSARG00000007250 | 1 retrocopy |