RetrogeneDB ID: | retro_dord_199 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_5236:35848..36159(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sh3bgrl | ||
Ensembl ID: | ENSDORG00000011106 | ||
Aliases: | None | ||
Description: | SH3-binding domain glutamic acid-rich protein like [Source:MGI Symbol;Acc:MGI:1930849] |
Percent Identity: | 93.33 % |
Parental protein coverage: | 92.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SSSTDIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGHP-LPPQIFNESQYRGDY |
S.S..IKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGHP.LPPQIFNESQYRGDY | |
Retrocopy | SGSMVIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGHP<LPPQIFNESQYRGDY |
Parental | DAFFEARENNAVYAFLGLTAPPGSKEAEAQAKQQA |
.AFFEA.ENNAVYAFLGLTAPPGS.EAEAQAKQQA | |
Retrocopy | NAFFEA*ENNAVYAFLGLTAPPGSMEAEAQAKQQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004130 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003568 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011106 | 2 retrocopies |
retro_dord_199 , retro_dord_588,
|
Equus caballus | ENSECAG00000012612 | 1 retrocopy |