RetrogeneDB ID: | retro_dord_588 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_36776:4250..4559(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sh3bgrl | ||
Ensembl ID: | ENSDORG00000011106 | ||
Aliases: | None | ||
Description: | SH3-binding domain glutamic acid-rich protein like [Source:MGI Symbol;Acc:MGI:1930849] |
Percent Identity: | 79.05 % |
Parental protein coverage: | 93.75 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SSSSTDIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGHPLPPQIFNESQYRGDY |
SS.S..IKKKQQD.LGFLEANKIGFEEKDIAA.EE..KWMRENVPENSRPATG.P..PQIFN.SQYRGDY | |
Retrocopy | SSGSMEIKKKQQDILGFLEANKIGFEEKDIAASEE--KWMRENVPENSRPATGCPVLPQIFNDSQYRGDY |
Parental | DAFFEARENNAVYAFLGLTAPPGSKEAEAQAKQQA |
..FFEA.ENN.V..FLGLTAPPGSKEA..Q.K..A | |
Retrocopy | ATFFEA*ENNSVCVFLGLTAPPGSKEADSQVKLPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004130 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003568 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011106 | 2 retrocopies |
retro_dord_199, retro_dord_588 ,
|
Equus caballus | ENSECAG00000012612 | 1 retrocopy |