RetrogeneDB ID: | retro_dord_230 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_6153:25214..25810(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccnc | ||
Ensembl ID: | ENSDORG00000008393 | ||
Aliases: | None | ||
Description: | cyclin C [Source:MGI Symbol;Acc:MGI:1858199] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 65.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VYFKRFYARYSLKSIDPVLMAPTCVFLASKVE-EFGVVSNTRLIAAATSVLKTRFSYAFPKEFPYKMNHI |
....RFYARYSLKSIDPVL.APTCVFLASKVE.E.GVVS..RLIAAATSVLKTRFSYAFPK.F.YKMNHI | |
Retrocopy | LFQERFYARYSLKSIDPVLLAPTCVFLASKVE<ESGVVSTMRLIAAATSVLKTRFSYAFPKQFHYKMNHI |
Parental | LECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVND-YRTDLCLLYPPFMIALACLHVA |
LECEFYLLELMDCCLIVYHPYRPLLQYVQD..QED.LLPLA.RIVND.YRTDLCLLYPPF.IAL.CL.VA | |
Retrocopy | LECEFYLLELMDCCLIVYHPYRPLLQYVQDIDQEDTLLPLA*RIVNDTYRTDLCLLYPPFLIALVCLRVA |
Parental | CVVQQKDARQWFAELSVDMEKILEIIRVILKLYEQWKNFDEKKEMATILSKMPKPKPPPN |
CVVQQKDARQWFAELSVDMEKI..IIRVI.KLYE.WKN.DEKKE.ATILSKMPKPKPPPN | |
Retrocopy | CVVQQKDARQWFAELSVDMEKIWGIIRVIFKLYEHWKNSDEKKEIATILSKMPKPKPPPN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008954 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003525 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011999 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000008393 | 2 retrocopies |
retro_dord_230 , retro_dord_75,
|
Dipodomys ordii | ENSDORG00000012846 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012815 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003309 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000012972 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000004353 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017525 | 1 retrocopy |