RetrogeneDB ID: | retro_dord_428 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_179241:1..482(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rab5c | ||
Ensembl ID: | ENSDORG00000006819 | ||
Aliases: | None | ||
Description: | RAB5C, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:105306] |
Percent Identity: | 83.85 % |
Parental protein coverage: | 74.07 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AFLTQTVCLDDTTVK-FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP |
AFLTQTVCL.DTTV..FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN...FARAKN.VKELQRQASP | |
Retrocopy | AFLTQTVCLEDTTVN>FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNRVKELQRQASP |
Parental | NIVIALAGNKADLANKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPG |
NIVIAL.GNK.DLANKRAV.F.EAQ.YADDNSLLFMETSAKT.MNVNEIFMAIAKKLPKNEPQN...... | |
Retrocopy | NIVIALSGNKTDLANKRAVDFKEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQNPGANSA |
Parental | RNRGVDLQENNPASRSQCCSN |
R.RGVDL.E.....RSQCCSN | |
Retrocopy | RGRGVDLTEPTQKTRSQCCSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000000472 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000004732 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006819 | 1 retrocopy |
retro_dord_428 ,
|
Dipodomys ordii | ENSDORG00000012429 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005614 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014792 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008398 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018568 | 2 retrocopies |