Parental gene:

RAB5C, ENSPPYG00000008398

Aliases:None
Description:Ras-related protein Rab-5C [Source:UniProtKB/Swiss-Prot;Acc:Q5R7L7]
Organism:Orangutan (Pongo abelii)
Coordinates:17:47291902..47322258(+)


>ENSPPYG00000008398
ATGGCGGGTCGGGGAGGCGCAGCACGACCCAATGGACCAGCTGCTGGGAACAAGATCTGTCAATTTAAGCTGGTTCTGCT
AGGGGAGTCTGCGGTAGGCAAATCCAGCCTCGTCCTCCGCTTTGTCAAGGGACAGTTTCACGAGTACCAGGAGAGCACAA
TCGGAGCGGCCTTCCTCACACAGACTGTCTGCCTGGATGACACAACAGTCAAGTTTGAGATCTGGGACACAGCTGGACAG
GAGCGGTATCACAGTCTGGCTCCCATGTACTATCGGGGGGCCCAGGCTGCCATCGTGGTCTATGACATCACCAACACAGA
TACATTTGCACGGGCCAAGAACTGGGTGAAGGAGCTACAGAGGCAGGCCAGCCCCAACATCGTCATTGCACTCGCGGGTA
ACAAGGCAGACCTGGCCAGCAAGAGAGCCGTGGAATTCCAGGAAGCACAAGCCTATGCAGACGACAACAGTTTGCTGTTC
ATGGAGACATCAGCAAAGACTGCAATGAACGTGAATGAAATCTTCATGGCAATAGCTAAGAAGCTTCCCAAGAACGAGCC
CCAGAATGCAACTGGTGCTCCAGGCCGAAACCGAGGTGTGGACCTCCAGGAGAACAACCCAGCCAGCCGGAGCCAGTGCT
GCAGCAACTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 81 .55 RPM
SRP007412_cerebellum 36 .72 RPM
SRP007412_heart 18 .51 RPM
SRP007412_kidney 137 .82 RPM
SRP007412_liver 52 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006003 possible_ortholog 1 retrogene
retro_amel_543,
Callithrix jacchus ENSCJAG00000000472 possible_ortholog 2 retrogenes
retro_cjac_189, retro_cjac_1948,
Cavia porcellus ENSCPOG00000011190 possible_ortholog 2 retrogenes
retro_cpor_333, retro_cpor_473,
Dipodomys ordii ENSDORG00000006819 possible_ortholog 1 retrogene
retro_dord_428,
Gorilla gorilla ENSGGOG00000005472 ortholog_one2one 1 retrogene
retro_ggor_2182,
Macropus eugenii ENSMEUG00000005614 ortholog_one2many 1 retrogene
retro_meug_2118,
Macaca mulatta ENSMMUG00000014761 ortholog_one2one 1 retrogene
retro_mmul_2022,
Monodelphis domestica ENSMODG00000014792 ortholog_one2many 1 retrogene
retro_mdom_1399,
Otolemur garnettii ENSOGAG00000009456 possible_ortholog 2 retrogenes
retro_ogar_2175, retro_ogar_985,
Pongo abelii ENSPPYG00000014074 within_species_paralog 2 retrogenes
retro_pabe_3094, retro_pabe_894,
Pan troglodytes ENSPTRG00000009194 ortholog_one2one 1 retrogene
retro_ptro_2237,
Rattus norvegicus ENSRNOG00000018568 possible_ortholog 2 retrogenes
retro_rnor_393, retro_rnor_73,
Tupaia belangeri ENSTBEG00000007092 ortholog_one2one 1 retrogene
retro_tbel_4668,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2664 79.58 86.57
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Download FASTA sequences of all ENSPPYG00000008398 retrocopies