RetrogeneDB ID: | retro_dord_530 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_27572:11928..12220(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl23 | ||
Ensembl ID: | ENSDORG00000001372 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455] |
Percent Identity: | 76. % |
Parental protein coverage: | 70. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KGIKGRLNRLPAAGV-GDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVF-LYFEDNAGVIVNNKG |
KGIKG.LNRLP.A.V...MVM.TVKKGK.ELRK.V...VVIRQ..SY.RKDGVF.LYFE.NAGV.VNNKG | |
Retrocopy | KGIKG*LNRLPTASV<SCMVMTTVKKGKLELRKNVYQVVVIRQ*QSYGRKDGVF<LYFEANAGVMVNNKG |
Parental | EMKGSAITGPVAKECADLWPRIASNAGSIA |
.MKGSAITGPVAKECADL.PR..SN.GSI. | |
Retrocopy | GMKGSAITGPVAKECADLCPRSVSNVGSIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004268 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000008311 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000001372 | 3 retrocopies |
retro_dord_366, retro_dord_475, retro_dord_530 ,
|
Felis catus | ENSFCAG00000014502 | 10 retrocopies | |
Homo sapiens | ENSG00000125691 | 9 retrocopies | |
Latimeria chalumnae | ENSLACG00000004430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004502 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000642 | 7 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013915 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012445 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001957 | 10 retrocopies | |
Rattus norvegicus | ENSRNOG00000004107 | 10 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014279 | 2 retrocopies |