RetrogeneDB ID: | retro_dord_754 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_7662:50249..51338(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Sppl2a | ||
Ensembl ID: | ENSDORG00000008946 | ||
Aliases: | None | ||
Description: | signal peptide peptidase like 2A [Source:MGI Symbol;Acc:MGI:1913802] |
Percent Identity: | 93.97 % |
Parental protein coverage: | 72.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AAQEAVLHASGSGTPLPSKDYCMLYNPLWTVLPTTLENATSRSLMDLTSTPLCNLSDLPLHGMNNKAVVV |
AAQEAVL.ASGSGTPLPSKDYCMLY.PLWTVLPTTLENATSRSLMDLT.TPLC.LSDLPLHGMNNKAVVV | |
Retrocopy | AAQEAVLRASGSGTPLPSKDYCMLYHPLWTVLPTTLENATSRSLMDLTGTPLCKLSDLPLHGMNNKAVVV |
Parental | QWGPCHFLEKARIAQKGGADALLVANNSVLFRPSGNRSEFQDVKIPIAFISQKDFKDMKQTLENN-TVKM |
QWGPCHFLEKARIAQKGGADALLVANNSVLFRPSGNRSEFQDVKIPIAFISQKDFKDMKQT...N.TVKM | |
Retrocopy | QWGPCHFLEKARIAQKGGADALLVANNSVLFRPSGNRSEFQDVKIPIAFISQKDFKDMKQTFGSNITVKM |
Parental | FIPPRPDFDYTMVVIFVISVFTVALGGYWSGL-IELENLKTITSTE-EREMRKKKEEYVTFSPLTVVVFV |
..PP.PDFDYTMVVIFVISVFT.ALGGYWSGL.IELENLKTITS.E.EREMRKKKEEYVTFSPLTVVVFV | |
Retrocopy | YLPPQPDFDYTMVVIFVISVFTEALGGYWSGL>IELENLKTITSAE<EREMRKKKEEYVTFSPLTVVVFV |
Parental | VICCVMMVLLYFFYKWLVYVIIAIFCIASAMSLYNCLAALIHKIPCGQCTITCRGKSIEVRLIFLSGLCI |
VICCVMMVLLYFFYK.LVYVIIAIFCIASAMSLYNCLAALIHKIPCGQCTITCRGKSIEVRLIFLSGLCI | |
Retrocopy | VICCVMMVLLYFFYK*LVYVIIAIFCIASAMSLYNCLAALIHKIPCGQCTITCRGKSIEVRLIFLSGLCI |
Parental | AVAVVWAVFRNEDRWAWILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGES |
AVAVVWAVFRNEDRW.WILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYD.....ITPFITKNGES | |
Retrocopy | AVAVVWAVFRNEDRWFWILQDILGIAFCLNLIKTLKLPNFKSCVILLGLLLLYDXXXXXITPFITKNGES |
Parental | IMVELAAGPFGNTEK |
IMVELAAGPFGNTEK | |
Retrocopy | IMVELAAGPFGNTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000008946 | 1 retrocopy |
retro_dord_754 ,
|
Homo sapiens | ENSG00000138600 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013154 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006472 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007070 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011652 | 1 retrocopy |