>retro_ecab_288
TTGAAGGAAATTCCGTATGGTACAAATGAAAAAGAACCACAGACAGAAGCGGCGGCCAACTCGCTCAAGAACTCTGTAAC
AGTGGGCTCCTTAGCACCCTGGTAGCTGACTTACAGCTCATTGACTTTGAGGGCAAAAAAAGATGTGGCTCAAATTTTCA
ACAATATTCTCAGAAGACAAATTGGTACAAGAACTCCCACTGTTGAATACATCTGCACCCAACAGAATATTTTGTTCGTG
TTATTGAAAGGGTATGAATCTCCAGAAATAGCTCTAAATTGTGGAATAATGTTGAGAGAATGCATCAGACACGAACCACT
TGCAAAAATCATTTTTGGTCAGAACAATTTTATGATTTCTTCAGATGTGTCGAAATGTCAATATTTGACGTAGCTTCAGA
TGCATTCGCCACATTCAAGGATTTACTTACAAGACATAAATTGCTCAGTGCAGAATTTTTGGAACAGCATTATGATAGAT
TCTTCAGTGAACATGAGAAGTTACTTCATTCAGAAAATTAGGTGACAAAAAGACAGTCACCCAAGCTTCTCGGTGAGTTA
CTATTAGACAGACACAACTTCACGATTATGACAAAATCCATCAGTAAACCTGAGAACCTCAAATTAATGATGAACCTTCT
GCGAGACAAAAGTTGTAACATCCAATTTGAGGCCTTTCACATTTTTAAGGTGTTTGTAGCCAATCCTAACAAGACACAGC
CCATCCTCAACATCCTCCTCTAGAACCAGACCAAACTC
ORF - retro_ecab_288 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.19 % |
Parental protein coverage: |
74.19 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MKEILYGTNEKEPQTEAVA-QLAQELYNSGLLSTLVADLQLIDFEGKK-DVAQIFNNILRRQIGTRTPTV |
| .KEI.YGTNEKEPQTEA.A.QLAQEL.NSGLLSTLVADLQLIDFEGKK.DVAQIFNNILRRQIGTRTPTV |
Retrocopy | LKEIPYGTNEKEPQTEAAA<QLAQELCNSGLLSTLVADLQLIDFEGKK>DVAQIFNNILRRQIGTRTPTV |
|
Parental | EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFA |
| EYICTQQNILF.LLKGYESPEIALNCGIMLRECIRHEPLAKII..WSEQFYDFFR.VEMS.FD.ASDAFA |
Retrocopy | EYICTQQNILFVLLKGYESPEIALNCGIMLRECIRHEPLAKIIF<WSEQFYDFFRCVEMSIFDVASDAFA |
|
Parental | TFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL |
| TFKDLLTRHKLLSAEFLEQHYDRFFSE.EKLLHSEN.VTKRQS.KLLGELLLDRHNFTIMTK.ISKPENL |
Retrocopy | TFKDLLTRHKLLSAEFLEQHYDRFFSEHEKLLHSEN*VTKRQSPKLLGELLLDRHNFTIMTKSISKPENL |
|
Parental | KLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKL |
| KLMMNLLRDKS.NIQFEAFH.FKVFVANPNKTQPIL.ILL.NQTKL |
Retrocopy | KLMMNLLRDKSCNIQFEAFHIFKVFVANPNKTQPILNILL*NQTKL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
13 .40 RPM |
SRP021940_cerebellum |
0 .00 RPM |
18 .44 RPM |
SRP021940_embryo |
0 .00 RPM |
14 .19 RPM |
SRP021940_placental_villous |
0 .10 RPM |
25 .93 RPM |
SRP021940_synovial_membrane |
0 .08 RPM |
11 .31 RPM |
SRP021940_testis |
0 .06 RPM |
27 .24 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_288 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_288 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_288 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.