RetrogeneDB ID: | retro_ecab_56 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 22:38069087..38069663(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000004411 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSECAG00000005085 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAVRVLVLVIAGLGLARAGPVPTSKPATTQRSCDIGRFKSLSPSELEAFKKAKDALENSL--ENWTCRS |
M....VLVL....LGLA.AGPVPTSKP.TT.R.C..GRF.SLSP.ELEAFKKAKDALE.SL....W.C.S | |
Retrocopy | MTTAWVLVLMTVVLGLATAGPVPTSKPTTTWRGCHMGRFQSLSPRELEAFKKAKDALEESLLQNDWSCSS |
Parental | PVFPTTWDLRQLQVWERPVALEAELALTLKILAMVADSSLADILDRPLHTLRHIHSELQACVPARPTAGP |
..FP.T.DLR.LQV.ERPVALEAEL.LTLK.L...AD.SL...LD.PLHTLRHIHS.L.ACVPA.PTAGP | |
Retrocopy | RLFPMTRDLRLLQVRERPVALEAELHLTLKVLRTAADASLGVVLDQPLHTLRHIHSRLRACVPAQPTAGP |
Parental | GPRGRLHQWLRQLHEVQKK-SWGCLEASVTFNLFRLLTRDLNCVASGDLCL |
.PR.RLH.WL..L.E..KK.S.GCLEASVTFNLFRLLTRDL.CVASGDLC. | |
Retrocopy | RPRSRLHHWLHRLQEATKKESQGCLEASVTFNLFRLLTRDLKCVASGDLCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 0 .00 RPM |
SRP021940_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP021940_embryo | 0 .00 RPM | 0 .03 RPM |
SRP021940_placental_villous | 0 .00 RPM | 0 .05 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 0 .00 RPM |
SRP021940_testis | 0 .00 RPM | 1 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_58 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008614 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005582 | 1 retrocopy | |
Equus caballus | ENSECAG00000005085 | 1 retrocopy |
retro_ecab_56 ,
|
Felis catus | ENSFCAG00000010737 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000023790 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017733 | 1 retrocopy |