RetrogeneDB ID: | retro_fcat_111 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:11765767..11766340(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000026203 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000010737 | ||
Aliases: | IFNL1, IL29 | ||
Description: | None |
Percent Identity: | 72.25 % |
Parental protein coverage: | 97.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAAWVLVLVAAGLSLASAGPVPTSKPTTAWTDCDFGRFKSLSPRELEAFKEARDALENSL--KSWSCTT |
MA.AWV.VLV.A.L.L.SAGPVPTS.P......C..G.F.SLSPRELEAFK.ARDALE.SL..K.WSC.. | |
Retrocopy | MAPAWVVVLVTAVLGLTSAGPVPTSRPPPTRRGCHVGKFPSLSPRELEAFKKARDALEESLPLKNWSCGS |
Parental | RPFPRNRDLRQLQVWERPVALEAELALTLKVLGTMADASQGDILDQPLHTLRHMHSELQACVSAQPTAGP |
R.FPR.RDL..LQ.WERP.ALEAEL.LTLKVLG.M.D.S.G..LDQPL..LRH.HSELQACV.AQPTAGP | |
Retrocopy | RLFPRTRDLIRLQAWERPAALEAELDLTLKVLGNMTDSSLGVVLDQPLRVLRHIHSELQACVRAQPTAGP |
Parental | QPQGRLHHWLHRLQEASRKESQGCLEASVLFNLFRLLKKDLECVASGDLCV |
.P.GRLHHWLHRLQ.A...ESQGCLEASV.FNLFRLL..DL.CV..GDLCV | |
Retrocopy | RPRGRLHHWLHRLQRAP-EESQGCLEASVTFNLFRLLTRDLKCVTGGDLCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008614 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005582 | 1 retrocopy | |
Equus caballus | ENSECAG00000005085 | 1 retrocopy | |
Felis catus | ENSFCAG00000010737 | 1 retrocopy |
retro_fcat_111 ,
|
Monodelphis domestica | ENSMODG00000023790 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017733 | 1 retrocopy |