RetrogeneDB ID: | retro_ecab_572 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 21:8846585..8847196(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | REXO2 | ||
Ensembl ID: | ENSECAG00000005988 | ||
Aliases: | None | ||
Description: | RNA exonuclease 2 [Source:HGNC Symbol;Acc:17851] |
Percent Identity: | 78.64 % |
Parental protein coverage: | 86.5 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCKEHHG |
M..GESMAQ.MV.VD..M.GLDI..DQIIEMACLITDSDLNILAEGP.LIIKQPD.LLD.MSD..K.HH. | |
Retrocopy | MVTGESMAQQMV*VDPVMIGLDIVEDQIIEMACLITDSDLNILAEGPTLIIKQPDKLLDIMSD*RKKHHV |
Parental | -KSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKYMPQFMKHLHYRIIDVST |
.KSGLTKAV.ESTMTL.QA.YEFLSFV..Q....LCPLAGNS.HADKKFL.KYM.QF.KHL..RI.DVST | |
Retrocopy | <KSGLTKAVRESTMTL*QADYEFLSFVQ*QALLVLCPLAGNSIHADKKFLEKYMLQFVKHLR*RISDVST |
Parental | VKELCRRWYPEEYEFAPKKAASHRALDDISESIKELQFYRNNIFKKKTDEKKRKIIENGENEKTVS |
VKE.CR.WYPEEYEFAPKKAASHRALDDISES.KEL.FY.NNIF.K.TDE.KRKI.EN.EN.KTVS | |
Retrocopy | VKEPCRCWYPEEYEFAPKKAASHRALDDISESTKELWFY*NNIFTKITDE-KRKITENWENKKTVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 19 .77 RPM |
SRP021940_cerebellum | 0 .00 RPM | 13 .40 RPM |
SRP021940_embryo | 0 .00 RPM | 7 .36 RPM |
SRP021940_placental_villous | 0 .00 RPM | 76 .79 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 39 .94 RPM |
SRP021940_testis | 0 .00 RPM | 30 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013497 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012434 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011255 | 1 retrocopy | |
Equus caballus | ENSECAG00000005988 | 1 retrocopy |
retro_ecab_572 ,
|
Myotis lucifugus | ENSMLUG00000009030 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013913 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002237 | 1 retrocopy |