>retro_ecab_581
GTCTACAGGGTGTATATTTGCCCCTTCTGGTTCCATCTGCTCCTCATCCCCAACAACTGCAAGATCTTCCAGGGCAAGAA
GCAGGACCTCTTCAAAGACATCCAGTCTCTTTCCCCAAACCCTGGCCTCAGGAAGCTCACTGACCTGAACAAGTGGGCAC
GGCTGGCAAGGTCCACGCCTACATCATCAGCTCCTTCAAGAAGATGCCTAATGTCTTCGGTAAAGAGAGCAAAAGGAAAG
AATTGGTGGACAACCTGGGGAGACCCACTAGAAGACTGAGTGGGAGCATCGGATGTCCCCTGGCAACTTTCCAAGACTCC
CGCAAGATGCAGGAACTTCCACATATCCAGGACTCCGTAAAGTGCCAGGCCTTGAAGCTCAAGCTGATGGATGTGATTAA
TGACATGCTAGCCAATGACATTGCCCGGTTGATGGTGATGGTGTGCCAGGAAGAGTCCCTGATGCCCTGCCAGGCTGCAA
AGGGCCGTGCCTTGGACGGCACCGTTAACAGGCTCTTTGGGCACAACTACTGCGAGGGGGGCGGCAAGGACATTTGATGA
CACTGAGTGAGTGGTGGACAAGGACAAGCCCACCTAAAAAGAGCTCTTTTACATGGCTAGTCACCTGTCAACTGCAAGGT
CGTGAGTGCCCGTGCCAAGAAAGAGATGGTGAAGTCCAAGCTGCACGATACCGTGCTGGGGGAGGTCTGGAAGCTGGCTG
ATGTGCACCAGGACAGGCTGCTGGACGATGAGGATTGTGCCCTGGACAGCCACTTCATCAAAGACAAGCTGGAGGGCGGC
AGGCTGCCCAGTGACCTGCCCCAAGACCTGATCACATCTAAGCAGAGG
ORF - retro_ecab_581 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.71 % |
Parental protein coverage: |
52.81 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | VIRVYI-GFWSHPLLIPDNRKLFEAEEQDLFRDIQSLPRNAALRKLNDLIKRARLA-KVHAYIISSLKKE |
| V.RVYI..FW.H.LLIP.N.K.F....QDLF.DIQSL..N..LRKL.DL.K.ARLA.KVHAYIISS.KK. |
Retrocopy | VYRVYICPFWFHLLLIPNNCKIFQGKKQDLFKDIQSLSPNPGLRKLTDLNKWARLA<KVHAYIISSFKK- |
|
Parental | MPSVFGKENKKKELVNNLA-EIYGRIEREHQISPGDFPNV-KKMQDQLQAQDFSKFQPLKSKLLEAVDDM |
| MP.VFGKE.K.KELV.NL..E.....E.EH..SPG.FP....KMQ.....QD..K.Q.LK.KL.....DM |
Retrocopy | MPNVFGKESKRKELVDNLG<ETH*KTEWEHRMSPGNFPRL>RKMQELPHIQDSVKCQALKLKLMDVINDM |
|
Parental | LAHDIAQLMVLVRQEETQRPVQMVKGGAFEGTLHGPFGHGYGEGAGEGI-DDAEWVV-ARDKPMYDEIFY |
| LA.DIA.LMV.V.QEE...P.Q..KG.A..GT....FGH.Y.EG.G..I.DD.E.VV..R..P.....F. |
Retrocopy | LANDIARLMVMVCQEESLMPCQAAKGRALDGTVNRLFGHNYCEGGGKDI>DDTE*VV>TRTSPPKKSSFT |
|
Parental | TL-SPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADIDKDGMLDDEEFALANHLIKVKLEGHELPNELP |
| .L.SPV..K...A.AKKEMV.SKL...VLG..WKLAD...D..LDDE..AL..H.IK.KLEG..LP..LP |
Retrocopy | WL>SPVNCKVVSARAKKEMVKSKLHDTVLGEVWKLADVHQDRLLDDEDCALDSHFIKDKLEGGRLPSDLP |
|
Parental | AHLLPPSKR |
| ..L.....R |
Retrocopy | QDLITSKQR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP021940_articular_cartilage |
0 .00 RPM |
53 .84 RPM |
SRP021940_cerebellum |
0 .00 RPM |
130 .92 RPM |
SRP021940_embryo |
0 .03 RPM |
23 .55 RPM |
SRP021940_placental_villous |
0 .00 RPM |
18 .28 RPM |
SRP021940_synovial_membrane |
0 .00 RPM |
12 .16 RPM |
SRP021940_testis |
0 .00 RPM |
16 .63 RPM |
Equus caballus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ecab_581 retrocopy.
Equus caballus was not studied using FANTOM5 data.
retro_ecab_581 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ecab_581 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.