>retro_eeur_123
TTCAACTCAACTAAATTGAGTAACTTTGTCAATATTATACAGCTCAGAAAATGTCTGCAGAGACAAGGACAAACATTGTT
GTGTAGCCTTTCTGCTCAGCCTCAGGTGTCCTCTGACAATTGTTGTCTCCAGTGGGGACTTAAGACATACAACACTTTCT
TTTTGAGGAATATTTCCCAGTCTCCCACCTCTACTAGGTAGAAGAATAATTCTGCCCAGAGTACTCTGCTTTCCTCTGTG
ATTTAACAGTCACAGAAGACACAAAAGATACCCAGCTTTGATTCTAAACTGTCTCTAGAAGAATTGGATGATTTGCCTCC
AATGTCTCCATTGCAGGCAGTATCTGAGGAAGAGGTTGTCTGAATTATTGCAAGCCCACCACTGCGCTCAGATTCATCCA
CACTTCGAGATTATGTGGATCATTCTGAGACTCTGTAGAAGTTAATGCTTCTAGGAGTGGATTTGTCCAAGATAGAAAAA
CATCCAGATGCTGCCAACCTCCTCCTGAAACTGGATTCTGAGAAAGACATTAAACACATACTCTGATTTCTAAAGATTTG
GGAATAGAGGATAAGAAACTTGATGCATTCTTAACCAAAAATTGTTACCTTTTCTGAAGAGCTTGGAAATCTTCAGACCA
TAGTGGCTTATCTACAGTCAAAAAAATTTCAGTAAAGCAGATATTACACAGATGGTAAAAAATGCACCATTT
ORF - retro_eeur_123 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.08 % |
Parental protein coverage: |
58.77 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | FDSIKSSNFINIMQLRKRLPRPRKTVLCGLSAQPQVSSDNCFLQWGFKTYSTSSLWNSSQSPTCTRQENN |
| F.S.K.SNF.NI.QLRK.L.R...T.LC.LSAQPQVSSDNC.LQWG.KTY.T..L.N.SQSPT.TR..NN |
Retrocopy | FNSTKLSNFVNIIQLRKCLQRQGQTLLCSLSAQPQVSSDNCCLQWGLKTYNTFFLRNISQSPTSTR*KNN |
|
Parental | SAQSTLLPSVIEQSEKTQQIPSFDSELSLEELDDLPPLSPLQPVSEEEAIRIIANPPLPPVSSTLRVYVD |
| SAQSTLL.SVI.QS.KTQ.IPSFDS.LSLEELDDLPP.SPLQ.VSEEE...IIA.PPL...SSTLR.YVD |
Retrocopy | SAQSTLLSSVI*QSQKTQKIPSFDSKLSLEELDDLPPMSPLQAVSEEEVV*IIASPPLRSDSSTLRDYVD |
|
Parental | HSETLQKLVLLGVDLSKIEKHPDAANLLLRLDFEKHIKHILLFL-KDLGIEDNQLGAFLTKNYAI-FSED |
| HSETL.KL.LLGVDLSKIEKHPDAANLLL.LD.EK.IKHIL.FL.KDLGIED..L.AFLTKN....F... |
Retrocopy | HSETL*KLMLLGVDLSKIEKHPDAANLLLKLDSEKDIKHIL*FL<KDLGIEDKKLDAFLTKNCYL<FLKS |
|
Parental | LENLQTRVAYLQSKNFSKADITQMVTKAPF |
| LE...........KNFSKADITQMV..APF |
Retrocopy | LEIFRP*WLIYSQKNFSKADITQMVKNAPF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .16 RPM |
12 .25 RPM |
SRP017611_kidney |
0 .00 RPM |
12 .38 RPM |
SRP017611_liver |
0 .00 RPM |
10 .61 RPM |
Erinaceus europaeus was not studied using ChIP-Seq data.
Erinaceus europaeus was not studied using EST data.
Erinaceus europaeus was not studied using FANTOM5 data.
retro_eeur_123 was not experimentally validated.
Retrocopy orthology:
Erinaceus europaeus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
5 retrocopies.